Variant report

Variant	rs4983035
Chromosome Location	chr14:25393389-25393390
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11621506	0.85[YRI][hapmap]
rs1957759	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs927598	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs927599	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901508	chr14:25365505-25451903	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1041051	chr14:25388230-25480511	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1047792	chr14:25388933-25503799	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25379400-25397800	Weak transcription	Right Ventricle	heart
2	chr14:25381400-25397800	Weak transcription	Fetal Intestine Small	intestine
3	chr14:25388200-25393800	Weak transcription	Brain Substantia Nigra	brain
4	chr14:25388400-25395000	Weak transcription	Brain Anterior Caudate	brain
5	chr14:25388600-25393800	Weak transcription	Brain Angular Gyrus	brain
6	chr14:25388600-25393800	Weak transcription	Brain Hippocampus Middle	brain
7	chr14:25389000-25395000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr14:25390200-25394400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr14:25390200-25394600	Weak transcription	Left Ventricle	heart
10	chr14:25390200-25395200	Weak transcription	HepG2	liver
11	chr14:25390200-25396400	Weak transcription	Fetal Lung	lung
12	chr14:25390200-25405200	Weak transcription	Pancreas	Pancrea
13	chr14:25390600-25396600	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr14:25391400-25395400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr14:25391800-25396400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr14:25391800-25396400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr14:25391800-25396400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr14:25391800-25396600	Weak transcription	HSMM	muscle
19	chr14:25391800-25396800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr14:25391800-25397200	Weak transcription	HSMMtube	muscle
21	chr14:25391800-25403600	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr14:25392000-25397200	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr14:25392200-25394200	Weak transcription	Fetal Heart	heart
24	chr14:25392600-25393400	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr14:25392800-25393800	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr14:25393000-25396800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr14:25393200-25393600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr14:25393200-25394800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr14:25393200-25395000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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