Variant report

Variant	rs11622565
Chromosome Location	chr14:78251328-78251329
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1006038	0.83[ASN][1000 genomes]
rs1006039	0.83[ASN][1000 genomes]
rs1006040	0.83[ASN][1000 genomes]
rs1008988	0.83[ASN][1000 genomes]
rs10138843	0.89[ASN][1000 genomes]
rs12435761	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12890375	0.91[ASN][1000 genomes]
rs1477259	0.83[ASN][1000 genomes]
rs1477260	0.83[ASN][1000 genomes]
rs1477261	0.80[ASN][1000 genomes]
rs1477262	0.82[ASN][1000 genomes]
rs1549119	0.80[ASN][1000 genomes]
rs1978416	0.82[ASN][1000 genomes]
rs1984925	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2112136	0.83[ASN][1000 genomes]
rs3759728	0.82[ASN][1000 genomes]
rs3783980	0.80[ASN][1000 genomes]
rs4632066	0.83[ASN][1000 genomes]
rs4635269	0.94[ASN][1000 genomes]
rs4903643	0.83[ASN][1000 genomes]
rs6574402	0.83[ASN][1000 genomes]
rs7142390	0.82[ASN][1000 genomes]
rs7146657	0.81[ASN][1000 genomes]
rs717683	0.81[ASN][1000 genomes]
rs759808	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs8011337	0.81[ASN][1000 genomes]
rs8014635	0.82[ASN][1000 genomes]
rs8018971	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758362	chr14:78074180-78262572	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv2759998	chr14:78074180-78262572	Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1043788	chr14:78178490-78381190	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	esv2754594	chr14:78222798-78275549	Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
5	esv3512735	chr14:78248572-78253007	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv3512736	chr14:78248572-78253007	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78248800-78252000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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