Variant report

Variant	rs12890375
Chromosome Location	chr14:78243176-78243177
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:78225918..78227695-chr14:78242437..78244075,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197734	Chromatin interaction
ENSG00000100603	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1006038	0.89[ASN][1000 genomes]
rs1006039	0.89[ASN][1000 genomes]
rs1006040	0.89[ASN][1000 genomes]
rs1008988	0.89[ASN][1000 genomes]
rs10138843	0.83[ASN][1000 genomes]
rs10142722	0.85[ASN][1000 genomes]
rs10149619	0.84[ASN][1000 genomes]
rs11159288	0.87[ASN][1000 genomes]
rs11622565	0.91[ASN][1000 genomes]
rs12435761	0.89[ASN][1000 genomes]
rs12887282	0.83[ASN][1000 genomes]
rs12887606	0.83[ASN][1000 genomes]
rs1469018	0.80[ASN][1000 genomes]
rs1477259	0.89[ASN][1000 genomes]
rs1477260	0.89[ASN][1000 genomes]
rs1477261	0.89[ASN][1000 genomes]
rs1477262	0.90[ASN][1000 genomes]
rs1549119	0.89[ASN][1000 genomes]
rs176943	0.82[ASN][1000 genomes]
rs176944	0.82[ASN][1000 genomes]
rs176946	0.82[ASN][1000 genomes]
rs176951	0.82[ASN][1000 genomes]
rs176952	0.82[ASN][1000 genomes]
rs176955	0.82[ASN][1000 genomes]
rs176960	0.82[ASN][1000 genomes]
rs176962	0.83[ASN][1000 genomes]
rs176966	0.80[ASN][1000 genomes]
rs176971	0.83[ASN][1000 genomes]
rs176979	0.83[ASN][1000 genomes]
rs176980	0.83[ASN][1000 genomes]
rs1978416	0.90[ASN][1000 genomes]
rs1984925	0.89[ASN][1000 genomes]
rs2032781	0.87[ASN][1000 genomes]
rs2112136	0.89[ASN][1000 genomes]
rs2267767	0.86[ASN][1000 genomes]
rs2267768	0.87[ASN][1000 genomes]
rs2299930	0.80[ASN][1000 genomes]
rs2544567	0.81[ASN][1000 genomes]
rs28603114	0.80[ASN][1000 genomes]
rs3759728	0.90[ASN][1000 genomes]
rs3783980	0.89[ASN][1000 genomes]
rs4383070	0.83[ASN][1000 genomes]
rs4632066	0.89[ASN][1000 genomes]
rs4635269	0.88[ASN][1000 genomes]
rs4903643	0.89[ASN][1000 genomes]
rs55909252	0.81[ASN][1000 genomes]
rs56017708	0.81[ASN][1000 genomes]
rs56412551	0.81[EUR][1000 genomes]
rs61992862	0.80[EUR][1000 genomes]
rs6574391	0.86[ASN][1000 genomes]
rs6574402	0.89[ASN][1000 genomes]
rs7142390	0.90[ASN][1000 genomes]
rs717683	0.86[ASN][1000 genomes]
rs759808	0.89[ASN][1000 genomes]
rs8003691	0.87[ASN][1000 genomes]
rs8003979	0.87[ASN][1000 genomes]
rs8011337	0.86[ASN][1000 genomes]
rs8014635	0.90[ASN][1000 genomes]
rs8016175	0.87[ASN][1000 genomes]
rs8016447	0.88[ASN][1000 genomes]
rs8018971	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758362	chr14:78074180-78262572	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv2759998	chr14:78074180-78262572	Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1043788	chr14:78178490-78381190	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	esv2754594	chr14:78222798-78275549	Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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