Variant report

Variant	rs11622735
Chromosome Location	chr14:33189449-33189450
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10137622	0.81[ASN][1000 genomes]
rs10148639	0.81[ASN][1000 genomes]
rs11156761	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11622781	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11628548	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12886214	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12886313	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1950221	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1955491	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1955499	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2057122	0.84[EUR][1000 genomes]
rs2383372	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4462503	0.82[EUR][1000 genomes]
rs55924110	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61604078	0.81[ASN][1000 genomes]
rs6571550	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72669820	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428624	chr14:33065571-33214223	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv832765	chr14:33188170-33367348	Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33172600-33191600	Weak transcription	Psoas Muscle	Psoas
2	chr14:33173200-33194800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:33178800-33191600	Weak transcription	Right Ventricle	heart
4	chr14:33179000-33193400	Weak transcription	HSMMtube	muscle
5	chr14:33180400-33193400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr14:33180600-33191800	Weak transcription	Left Ventricle	heart
7	chr14:33180600-33193800	Weak transcription	Fetal Stomach	stomach
8	chr14:33180800-33194600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr14:33181000-33193000	Weak transcription	Brain Substantia Nigra	brain
10	chr14:33183400-33190000	Weak transcription	Brain Hippocampus Middle	brain
11	chr14:33183400-33193000	Weak transcription	Brain Anterior Caudate	brain
12	chr14:33183600-33194000	Weak transcription	Aorta	Aorta
13	chr14:33186200-33196200	Enhancers	Fetal Heart	heart
14	chr14:33188600-33189800	Weak transcription	Fetal Muscle Leg	muscle
15	chr14:33188600-33193000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr14:33189000-33190200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr14:33189000-33193600	Weak transcription	Brain Angular Gyrus	brain
18	chr14:33189200-33198000	Weak transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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