Variant report

Variant	rs12886214
Chromosome Location	chr14:33212330-33212331
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10137622	0.98[ASN][1000 genomes]
rs10148639	0.98[ASN][1000 genomes]
rs11156761	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11622735	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11622781	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11628548	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12886313	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1950221	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1955491	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1955499	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2383372	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4462503	0.87[EUR][1000 genomes]
rs55924110	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61604078	0.98[ASN][1000 genomes]
rs6571550	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72669820	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428624	chr14:33065571-33214223	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv832765	chr14:33188170-33367348	Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33194600-33225600	Weak transcription	Aorta	Aorta
2	chr14:33194800-33222200	Weak transcription	Fetal Muscle Leg	muscle
3	chr14:33198600-33214800	Weak transcription	Right Ventricle	heart
4	chr14:33199000-33218000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr14:33202600-33228800	Weak transcription	Brain Angular Gyrus	brain
6	chr14:33203600-33220600	Weak transcription	Brain Substantia Nigra	brain
7	chr14:33205200-33254600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr14:33205800-33215400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr14:33206400-33218800	Weak transcription	Brain Hippocampus Middle	brain
10	chr14:33206400-33225000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr14:33207600-33224800	Weak transcription	Left Ventricle	heart
12	chr14:33207600-33225800	Weak transcription	HSMMtube	muscle
13	chr14:33208200-33223200	Weak transcription	Brain Germinal Matrix	brain
14	chr14:33208200-33225800	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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