Variant report

Variant	rs11623641
Chromosome Location	chr14:56750158-56750159
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 246 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:240)

rs_ID	r²[population]
rs10132542	0.87[EUR][1000 genomes]
rs10134875	0.96[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.81[EUR][1000 genomes]
rs10483665	0.87[EUR][1000 genomes]
rs10498483	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10782430	0.96[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes]
rs10782431	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes]
rs10782432	0.90[EUR][1000 genomes]
rs10873094	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10873095	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11158077	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes]
rs11158079	0.88[EUR][1000 genomes]
rs11158080	0.90[EUR][1000 genomes]
rs11158081	0.91[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.90[EUR][1000 genomes]
rs11158083	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes]
rs11158084	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11158085	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11158086	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11158087	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11158088	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11158089	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11620794	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes]
rs11620940	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11621515	0.86[EUR][1000 genomes]
rs11622543	0.94[EUR][1000 genomes]
rs11622592	0.96[CEU][hapmap];0.95[CHB][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11622705	0.89[EUR][1000 genomes]
rs11623159	0.88[EUR][1000 genomes]
rs11623431	0.96[CEU][hapmap];0.95[CHB][hapmap];0.80[CHD][hapmap];0.95[JPT][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs11623568	0.87[EUR][1000 genomes]
rs11623621	0.88[EUR][1000 genomes]
rs11624369	0.89[EUR][1000 genomes]
rs11625060	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes]
rs11625094	0.86[EUR][1000 genomes]
rs11625156	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes]
rs11626580	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11626962	0.92[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.90[EUR][1000 genomes]
rs11627174	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11627534	0.96[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes]
rs11627782	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11627862	0.96[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes]
rs11629343	0.86[EUR][1000 genomes]
rs11845169	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11845193	0.92[CEU][hapmap];0.95[CHB][hapmap];0.80[CHD][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs11845343	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11847205	0.96[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes]
rs11847211	0.90[EUR][1000 genomes]
rs11849649	0.82[EUR][1000 genomes]
rs11851027	0.90[EUR][1000 genomes]
rs11852126	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12184994	0.88[EUR][1000 genomes]
rs12184996	0.88[EUR][1000 genomes]
rs12185058	0.87[EUR][1000 genomes]
rs12432053	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12432184	0.96[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes]
rs12432586	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12434882	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12434925	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12436214	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes]
rs12586292	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes]
rs12589228	0.80[EUR][1000 genomes]
rs12590244	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes]
rs12877991	0.96[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes]
rs12878363	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes]
rs12878509	0.88[EUR][1000 genomes]
rs12878875	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12878923	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs12879359	0.94[EUR][1000 genomes]
rs12879613	0.87[EUR][1000 genomes]
rs12879637	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes]
rs12880559	0.94[EUR][1000 genomes]
rs12881079	0.88[EUR][1000 genomes]
rs12881396	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes]
rs12881606	0.88[EUR][1000 genomes]
rs12882094	0.96[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes]
rs12883407	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs12884429	0.96[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes]
rs12885283	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12885299	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12885416	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12886482	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12888052	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes]
rs12888145	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes]
rs12888678	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes]
rs12889590	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12890625	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12890930	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12891628	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12892065	0.91[EUR][1000 genomes]
rs12892155	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12892169	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12892273	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12892351	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12892717	0.87[EUR][1000 genomes]
rs12893611	0.96[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes]
rs12894921	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes]
rs12895639	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12895653	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12895666	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12895741	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12897424	0.96[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes]
rs1382976	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1382978	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1471496	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes]
rs1471497	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes]
rs1479741	0.88[EUR][1000 genomes]
rs1479742	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes]
rs1479743	0.87[EUR][1000 genomes]
rs1479744	0.96[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes]
rs1479745	0.96[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes]
rs1479746	0.96[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];0.80[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.93[EUR][1000 genomes]
rs1479747	0.92[EUR][1000 genomes]
rs1479748	0.96[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes]
rs1552016	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes]
rs1678976	0.95[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes]
rs17254064	0.96[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes]
rs17832597	0.90[EUR][1000 genomes]
rs190263	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes]
rs1953210	0.94[EUR][1000 genomes]
rs1953211	0.96[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes]
rs1958995	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1958996	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2086324	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2086325	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2127439	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2228707	0.95[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes]
rs2281826	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes]
rs2343377	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes]
rs2343378	0.84[EUR][1000 genomes]
rs2343603	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs242396	0.87[EUR][1000 genomes]
rs242418	0.96[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes]
rs242421	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.96[TSI][hapmap];0.87[EUR][1000 genomes]
rs242422	0.96[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap];0.87[EUR][1000 genomes]
rs242424	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes]
rs2880664	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs36155724	0.90[EUR][1000 genomes]
rs36160731	0.90[EUR][1000 genomes]
rs36165389	0.92[EUR][1000 genomes]
rs36187322	0.90[EUR][1000 genomes]
rs3783663	0.90[EUR][1000 genomes]
rs3783665	0.96[CEU][hapmap];0.83[CHD][hapmap];0.85[GIH][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes]
rs3783666	0.91[EUR][1000 genomes]
rs3783667	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes]
rs3783669	0.93[EUR][1000 genomes]
rs3783674	1.00[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes]
rs3783676	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes]
rs3825618	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes]
rs3895330	0.96[CEU][hapmap];0.95[CHB][hapmap];0.81[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes]
rs3912199	0.88[CEU][hapmap];0.90[CHB][hapmap];0.83[CHD][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs3912200	0.96[CEU][hapmap];0.95[CHB][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs4143948	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4243603	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4243604	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4243605	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4318129	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4343188	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4526946	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4603468	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4898882	0.96[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes]
rs4898885	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs4898886	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes]
rs4898887	0.88[EUR][1000 genomes]
rs4898888	0.89[EUR][1000 genomes]
rs4898890	0.96[CEU][hapmap];0.95[CHB][hapmap];0.80[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes]
rs4898891	0.96[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes]
rs4898892	0.96[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes]
rs4898893	0.84[JPT][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4901638	0.96[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.80[EUR][1000 genomes]
rs4901639	0.96[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes]
rs4901640	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes]
rs4901641	0.87[EUR][1000 genomes]
rs4901642	0.87[EUR][1000 genomes]
rs4901643	0.87[EUR][1000 genomes]
rs4901644	0.88[EUR][1000 genomes]
rs4901645	0.88[EUR][1000 genomes]
rs4901646	0.88[EUR][1000 genomes]
rs4901647	0.88[EUR][1000 genomes]
rs4901648	0.88[EUR][1000 genomes]
rs4901650	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes]
rs4901651	0.87[EUR][1000 genomes]
rs4901652	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes]
rs4901653	0.88[EUR][1000 genomes]
rs4901654	0.89[EUR][1000 genomes]
rs4901655	0.90[EUR][1000 genomes]
rs4901656	0.94[EUR][1000 genomes]
rs4901657	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4901658	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4901659	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4901660	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4901661	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4901662	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4901663	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4901665	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4901666	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs5008735	0.91[EUR][1000 genomes]
rs5008737	0.82[EUR][1000 genomes]
rs6573083	0.86[EUR][1000 genomes]
rs6573086	0.85[TSI][hapmap]
rs7140575	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes]
rs7142227	0.96[CEU][hapmap];0.90[CHB][hapmap];0.83[CHD][hapmap];0.80[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes]
rs7143043	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7143399	0.93[EUR][1000 genomes]
rs7143757	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7144183	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7148928	0.93[EUR][1000 genomes]
rs7149557	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7152954	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7153877	0.87[EUR][1000 genomes]
rs7155890	0.84[EUR][1000 genomes]
rs7156562	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes]
rs715756	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs715757	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7158482	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7159737	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7159804	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7160779	0.92[EUR][1000 genomes]
rs7161695	0.93[EUR][1000 genomes]
rs7161696	0.96[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.93[EUR][1000 genomes]
rs8003276	0.86[EUR][1000 genomes]
rs8004311	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes]
rs8006111	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes]
rs8010678	0.88[EUR][1000 genomes]
rs8014215	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes]
rs8014516	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes]
rs8014521	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes]
rs8014536	0.96[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes]
rs8015177	0.93[EUR][1000 genomes]
rs8015347	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes]
rs8015669	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016891	0.88[EUR][1000 genomes]
rs8016951	0.96[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes]
rs8016987	0.88[EUR][1000 genomes]
rs8017346	0.88[EUR][1000 genomes]
rs8181923	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8181968	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8181971	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8181972	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs899605	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9646155	0.96[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes]
rs975291	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533129	chr14:56568535-56819234	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1844788	chr14:56594420-56771207	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1044886	chr14:56689682-56834648	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv542104	chr14:56689682-56834648	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv901978	chr14:56740554-56799997	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv901979	chr14:56740554-56802610	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11623641	CDKN3	cis	parietal	SCAN
rs11623641	ADAM10	trans	parietal	SCAN
rs11623641	EXOC5	cis	cerebellum	SCAN

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56717800-56765400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:56718400-56755800	Weak transcription	Ovary	ovary
3	chr14:56718800-56751400	Weak transcription	Primary B cells from cord blood	blood
4	chr14:56724600-56755200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr14:56735200-56755200	Weak transcription	Adipose Nuclei	Adipose
6	chr14:56735800-56750200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr14:56735800-56751800	Weak transcription	Primary T cells from cord blood	blood
8	chr14:56735800-56765800	Weak transcription	NHLF	lung
9	chr14:56737400-56755800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr14:56738800-56755800	Weak transcription	Lung	lung
11	chr14:56738800-56766000	Weak transcription	Brain Angular Gyrus	brain
12	chr14:56738800-56775600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr14:56740000-56756000	Weak transcription	Brain Hippocampus Middle	brain
14	chr14:56740000-56757000	Weak transcription	Left Ventricle	heart
15	chr14:56740000-56764800	Weak transcription	Right Ventricle	heart
16	chr14:56741000-56755800	Weak transcription	Fetal Stomach	stomach
17	chr14:56741400-56756000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr14:56741400-56758200	Weak transcription	Colon Smooth Muscle	Colon
19	chr14:56741600-56755200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr14:56741600-56755200	Weak transcription	Fetal Intestine Large	intestine
21	chr14:56741600-56766000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr14:56742000-56757000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr14:56742600-56751600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr14:56742600-56755800	Weak transcription	Aorta	Aorta
25	chr14:56743200-56755800	Weak transcription	Pancreas	Pancrea
26	chr14:56743800-56751600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr14:56744000-56755000	Weak transcription	Thymus	Thymus
28	chr14:56744600-56751000	Weak transcription	Fetal Intestine Small	intestine
29	chr14:56744600-56755000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr14:56745000-56755000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr14:56745000-56755600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr14:56746000-56756000	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr14:56746800-56752400	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr14:56746800-56756400	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr14:56747000-56765400	Weak transcription	Duodenum Mucosa	Duodenum
36	chr14:56747000-56768600	Strong transcription	Dnd41	blood
37	chr14:56747200-56756600	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr14:56748400-56762800	Weak transcription	Stomach Mucosa	stomach
39	chr14:56748600-56756800	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr14:56749000-56755000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr14:56749000-56762400	Weak transcription	Gastric	stomach
42	chr14:56749200-56755000	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr14:56749400-56756000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr14:56749600-56752400	Strong transcription	Fetal Thymus	thymus
45	chr14:56750000-56750400	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr14:56750000-56750800	Strong transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links