Variant report

Variant	rs12432586
Chromosome Location	chr14:56770035-56770036
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:56221789..56224702-chr14:56769776..56771612,2	K562	blood:
2	chr14:56769713..56772001-chr14:56773071..56775429,2	K562	blood:

Extended variants
information (count: 229 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:223)

rs_ID	r²[population]
rs10132542	0.82[EUR][1000 genomes]
rs10483665	0.82[EUR][1000 genomes]
rs10498483	0.90[EUR][1000 genomes]
rs10782430	0.84[EUR][1000 genomes]
rs10782431	0.84[EUR][1000 genomes]
rs10782432	0.84[EUR][1000 genomes]
rs10873094	0.91[EUR][1000 genomes]
rs10873095	0.88[EUR][1000 genomes]
rs11158077	0.81[EUR][1000 genomes]
rs11158079	0.82[EUR][1000 genomes]
rs11158080	0.84[EUR][1000 genomes]
rs11158081	0.84[EUR][1000 genomes]
rs11158083	0.88[EUR][1000 genomes]
rs11158084	0.89[EUR][1000 genomes]
rs11158085	0.89[EUR][1000 genomes]
rs11158086	0.90[EUR][1000 genomes]
rs11158087	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11158088	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11158089	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11620794	0.80[EUR][1000 genomes]
rs11620940	0.90[EUR][1000 genomes]
rs11621515	0.81[EUR][1000 genomes]
rs11622543	0.88[EUR][1000 genomes]
rs11622592	0.88[EUR][1000 genomes]
rs11622705	0.83[EUR][1000 genomes]
rs11623159	0.83[EUR][1000 genomes]
rs11623431	0.83[EUR][1000 genomes]
rs11623568	0.82[EUR][1000 genomes]
rs11623621	0.83[EUR][1000 genomes]
rs11623641	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11624369	0.84[EUR][1000 genomes]
rs11625060	0.88[EUR][1000 genomes]
rs11625094	0.81[EUR][1000 genomes]
rs11625156	0.82[EUR][1000 genomes]
rs11626580	0.89[EUR][1000 genomes]
rs11626962	0.84[EUR][1000 genomes]
rs11627174	0.88[EUR][1000 genomes]
rs11627534	0.83[EUR][1000 genomes]
rs11627782	0.89[EUR][1000 genomes]
rs11627862	0.83[EUR][1000 genomes]
rs11629343	0.80[EUR][1000 genomes]
rs11845169	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11845193	0.81[EUR][1000 genomes]
rs11845343	0.87[EUR][1000 genomes]
rs11847205	0.84[EUR][1000 genomes]
rs11847211	0.84[EUR][1000 genomes]
rs11851027	0.84[EUR][1000 genomes]
rs11852126	0.90[EUR][1000 genomes]
rs12184994	0.83[EUR][1000 genomes]
rs12184996	0.83[EUR][1000 genomes]
rs12185058	0.82[EUR][1000 genomes]
rs12432053	0.90[EUR][1000 genomes]
rs12432184	0.87[EUR][1000 genomes]
rs12434882	0.90[EUR][1000 genomes]
rs12434925	0.90[EUR][1000 genomes]
rs12436214	0.81[EUR][1000 genomes]
rs12586292	0.83[EUR][1000 genomes]
rs12590244	0.84[EUR][1000 genomes]
rs12877991	0.88[EUR][1000 genomes]
rs12878363	0.83[EUR][1000 genomes]
rs12878509	0.83[EUR][1000 genomes]
rs12878875	0.90[EUR][1000 genomes]
rs12879359	0.88[EUR][1000 genomes]
rs12879613	0.82[EUR][1000 genomes]
rs12879637	0.88[EUR][1000 genomes]
rs12880559	0.88[EUR][1000 genomes]
rs12881079	0.83[EUR][1000 genomes]
rs12881396	0.83[EUR][1000 genomes]
rs12881606	0.83[EUR][1000 genomes]
rs12883407	0.81[EUR][1000 genomes]
rs12884429	0.81[EUR][1000 genomes]
rs12885283	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12885299	0.90[EUR][1000 genomes]
rs12885416	0.90[EUR][1000 genomes]
rs12886482	0.90[EUR][1000 genomes]
rs12888052	0.87[EUR][1000 genomes]
rs12888145	0.88[EUR][1000 genomes]
rs12888678	0.82[EUR][1000 genomes]
rs12889590	0.90[EUR][1000 genomes]
rs12890625	0.90[EUR][1000 genomes]
rs12890930	0.90[EUR][1000 genomes]
rs12891628	0.90[EUR][1000 genomes]
rs12892065	0.86[EUR][1000 genomes]
rs12892155	0.90[EUR][1000 genomes]
rs12892169	0.90[EUR][1000 genomes]
rs12892273	0.86[EUR][1000 genomes]
rs12892351	0.90[EUR][1000 genomes]
rs12892717	0.81[EUR][1000 genomes]
rs12893611	0.88[EUR][1000 genomes]
rs12894921	0.88[EUR][1000 genomes]
rs12895639	0.90[EUR][1000 genomes]
rs12895653	0.90[EUR][1000 genomes]
rs12895666	0.90[EUR][1000 genomes]
rs12895741	0.90[EUR][1000 genomes]
rs12897424	0.88[EUR][1000 genomes]
rs1382976	0.88[EUR][1000 genomes]
rs1382978	0.91[EUR][1000 genomes]
rs1471496	0.88[EUR][1000 genomes]
rs1471497	0.88[EUR][1000 genomes]
rs1479741	0.83[EUR][1000 genomes]
rs1479742	0.83[EUR][1000 genomes]
rs1479743	0.82[EUR][1000 genomes]
rs1479744	0.88[EUR][1000 genomes]
rs1479745	0.87[EUR][1000 genomes]
rs1479746	0.87[EUR][1000 genomes]
rs1479747	0.86[EUR][1000 genomes]
rs1479748	0.87[EUR][1000 genomes]
rs1552016	0.83[EUR][1000 genomes]
rs17254064	0.88[EUR][1000 genomes]
rs17832597	0.84[EUR][1000 genomes]
rs190263	0.82[EUR][1000 genomes]
rs1953210	0.88[EUR][1000 genomes]
rs1953211	0.88[EUR][1000 genomes]
rs1958995	0.90[EUR][1000 genomes]
rs1958996	0.90[EUR][1000 genomes]
rs2086324	0.88[EUR][1000 genomes]
rs2086325	0.88[EUR][1000 genomes]
rs2127439	0.90[EUR][1000 genomes]
rs2228707	0.81[EUR][1000 genomes]
rs2281826	0.82[EUR][1000 genomes]
rs2343377	0.81[EUR][1000 genomes]
rs2343603	0.90[EUR][1000 genomes]
rs242396	0.81[EUR][1000 genomes]
rs242418	0.81[EUR][1000 genomes]
rs242421	0.82[EUR][1000 genomes]
rs242422	0.82[EUR][1000 genomes]
rs242424	0.82[EUR][1000 genomes]
rs2880664	0.88[EUR][1000 genomes]
rs36155724	0.84[EUR][1000 genomes]
rs36160731	0.85[EUR][1000 genomes]
rs36165389	0.87[EUR][1000 genomes]
rs36187322	0.84[EUR][1000 genomes]
rs3783663	0.84[EUR][1000 genomes]
rs3783665	0.84[EUR][1000 genomes]
rs3783666	0.86[EUR][1000 genomes]
rs3783667	0.84[EUR][1000 genomes]
rs3783669	0.87[EUR][1000 genomes]
rs3783674	0.88[EUR][1000 genomes]
rs3783676	0.89[EUR][1000 genomes]
rs3825618	0.84[EUR][1000 genomes]
rs3895330	0.82[EUR][1000 genomes]
rs3912199	0.81[EUR][1000 genomes]
rs4143948	0.90[EUR][1000 genomes]
rs4243603	0.90[EUR][1000 genomes]
rs4243604	0.89[EUR][1000 genomes]
rs4243605	0.90[EUR][1000 genomes]
rs4318129	0.90[EUR][1000 genomes]
rs4343188	0.88[EUR][1000 genomes]
rs4526946	0.89[EUR][1000 genomes]
rs4603468	0.90[EUR][1000 genomes]
rs4898886	0.83[EUR][1000 genomes]
rs4898887	0.83[EUR][1000 genomes]
rs4898888	0.84[EUR][1000 genomes]
rs4898890	0.84[EUR][1000 genomes]
rs4898891	0.86[EUR][1000 genomes]
rs4898892	0.88[EUR][1000 genomes]
rs4898893	0.90[EUR][1000 genomes]
rs4901640	0.81[EUR][1000 genomes]
rs4901641	0.81[EUR][1000 genomes]
rs4901642	0.82[EUR][1000 genomes]
rs4901643	0.82[EUR][1000 genomes]
rs4901644	0.83[EUR][1000 genomes]
rs4901645	0.83[EUR][1000 genomes]
rs4901646	0.83[EUR][1000 genomes]
rs4901647	0.83[EUR][1000 genomes]
rs4901648	0.83[EUR][1000 genomes]
rs4901650	0.83[EUR][1000 genomes]
rs4901651	0.82[EUR][1000 genomes]
rs4901652	0.82[EUR][1000 genomes]
rs4901653	0.83[EUR][1000 genomes]
rs4901654	0.84[EUR][1000 genomes]
rs4901655	0.84[EUR][1000 genomes]
rs4901656	0.88[EUR][1000 genomes]
rs4901657	0.88[EUR][1000 genomes]
rs4901658	0.88[EUR][1000 genomes]
rs4901659	0.88[EUR][1000 genomes]
rs4901660	0.90[EUR][1000 genomes]
rs4901661	0.90[EUR][1000 genomes]
rs4901662	0.90[EUR][1000 genomes]
rs4901663	0.90[EUR][1000 genomes]
rs4901665	0.90[EUR][1000 genomes]
rs4901666	0.86[EUR][1000 genomes]
rs5008735	0.84[EUR][1000 genomes]
rs6573083	0.81[EUR][1000 genomes]
rs7140575	0.81[EUR][1000 genomes]
rs7142227	0.83[EUR][1000 genomes]
rs7143043	0.86[EUR][1000 genomes]
rs7143399	0.87[EUR][1000 genomes]
rs7143757	0.88[EUR][1000 genomes]
rs7144183	0.88[EUR][1000 genomes]
rs7148928	0.88[EUR][1000 genomes]
rs7149557	0.86[EUR][1000 genomes]
rs7152954	0.90[EUR][1000 genomes]
rs7153877	0.81[EUR][1000 genomes]
rs7156562	0.81[EUR][1000 genomes]
rs715756	0.90[EUR][1000 genomes]
rs715757	0.90[EUR][1000 genomes]
rs7158482	0.88[EUR][1000 genomes]
rs7159737	0.90[EUR][1000 genomes]
rs7160779	0.87[EUR][1000 genomes]
rs7161695	0.87[EUR][1000 genomes]
rs7161696	0.87[EUR][1000 genomes]
rs8003276	0.81[EUR][1000 genomes]
rs8006111	0.84[EUR][1000 genomes]
rs8010678	0.83[EUR][1000 genomes]
rs8014215	0.87[EUR][1000 genomes]
rs8014516	0.88[EUR][1000 genomes]
rs8014521	0.83[EUR][1000 genomes]
rs8014536	0.88[EUR][1000 genomes]
rs8015177	0.88[EUR][1000 genomes]
rs8015347	0.88[EUR][1000 genomes]
rs8015669	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8016891	0.83[EUR][1000 genomes]
rs8016951	0.83[EUR][1000 genomes]
rs8016987	0.83[EUR][1000 genomes]
rs8017346	0.82[EUR][1000 genomes]
rs8181923	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8181968	0.90[EUR][1000 genomes]
rs8181971	0.90[EUR][1000 genomes]
rs8181972	0.90[EUR][1000 genomes]
rs899605	0.89[EUR][1000 genomes]
rs9646155	0.88[EUR][1000 genomes]
rs975291	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533129	chr14:56568535-56819234	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1844788	chr14:56594420-56771207	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1044886	chr14:56689682-56834648	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv542104	chr14:56689682-56834648	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv901978	chr14:56740554-56799997	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv901979	chr14:56740554-56802610	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56738800-56775600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr14:56750400-56777600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:56753200-56773200	Weak transcription	Fetal Brain Male	brain
4	chr14:56754600-56771200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr14:56757400-56773200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr14:56758600-56770800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr14:56758800-56772400	Weak transcription	Brain Germinal Matrix	brain
8	chr14:56759000-56777000	Weak transcription	Left Ventricle	heart
9	chr14:56760800-56770800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr14:56764400-56770400	Weak transcription	Fetal Intestine Large	intestine
11	chr14:56764400-56774400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr14:56764400-56785600	Weak transcription	Lung	lung
13	chr14:56764400-56798200	Weak transcription	Pancreas	Pancrea
14	chr14:56764400-56808800	Weak transcription	Thymus	Thymus
15	chr14:56764800-56771200	Weak transcription	Fetal Brain Female	brain
16	chr14:56765000-56771200	Weak transcription	Fetal Thymus	thymus
17	chr14:56765000-56772800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr14:56765200-56774800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr14:56765200-56776600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr14:56766000-56771000	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr14:56766400-56776800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr14:56767600-56777200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr14:56767800-56777200	Weak transcription	NH-A	brain
24	chr14:56768600-56784600	Weak transcription	Dnd41	blood
25	chr14:56768800-56771400	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr14:56769000-56771200	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr14:56769200-56771600	Weak transcription	Fetal Intestine Small	intestine
28	chr14:56769800-56771200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr14:56769800-56776000	Weak transcription	Primary hematopoietic stem cells	blood
30	chr14:56769800-56780200	Weak transcription	Primary B cells from cord blood	blood
31	chr14:56770000-56770200	Enhancers	Primary T cells from cord blood	blood

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