Variant report

Variant	rs11624504
Chromosome Location	chr14:65615479-65615480
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11624558	0.96[EUR][1000 genomes]
rs11627540	0.96[EUR][1000 genomes]
rs12100752	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12880781	0.81[TSI][hapmap]
rs2898862	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4325478	0.95[EUR][1000 genomes]
rs4325479	0.96[EUR][1000 genomes]
rs4468529	0.93[EUR][1000 genomes]
rs4899162	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4902368	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4902369	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs11624504	MAX	cis	parietal	SCAN
rs11624504	CHURC1	cis	parietal	SCAN
rs11624504	CHURC1	cis	lymphoblastoid	seeQTL
rs11624504	RAB15	cis	lymphoblastoid	seeQTL
rs11624504	GPX2	cis	cerebellum	SCAN
rs11624504	PRKCH	cis	cerebellum	SCAN
rs11624504	RAB15	cis	cerebellum	SCAN
rs11624504	MAX	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65610200-65623400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:65612600-65617400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr14:65612800-65617800	Weak transcription	Fetal Brain Female	brain
4	chr14:65612800-65617800	Weak transcription	Fetal Lung	lung
5	chr14:65613000-65617600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr14:65615400-65623200	Weak transcription	Gastric	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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