Variant report

Variant	rs4325478
Chromosome Location	chr14:65613657-65613658
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10873180	0.82[ASN][1000 genomes]
rs10873181	0.82[ASN][1000 genomes]
rs10873182	0.82[ASN][1000 genomes]
rs10873183	0.82[ASN][1000 genomes]
rs11158578	0.82[ASN][1000 genomes]
rs11624504	0.95[EUR][1000 genomes]
rs11624558	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11627540	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12100752	0.95[EUR][1000 genomes]
rs2898862	0.96[EUR][1000 genomes]
rs4325479	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4468529	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4899162	0.96[EUR][1000 genomes]
rs4902368	0.96[EUR][1000 genomes]
rs4902369	0.95[EUR][1000 genomes]
rs61987428	0.82[ASN][1000 genomes]
rs61987429	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65610200-65623400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:65612600-65617400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr14:65612800-65617800	Weak transcription	Fetal Brain Female	brain
4	chr14:65612800-65617800	Weak transcription	Fetal Lung	lung
5	chr14:65613000-65617600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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