Variant report

Variant	rs61987428
Chromosome Location	chr14:65606156-65606157
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10873180	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10873181	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10873182	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10873183	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10873185	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11158572	0.81[EUR][1000 genomes]
rs11158573	0.81[EUR][1000 genomes]
rs11158574	0.81[EUR][1000 genomes]
rs11158577	0.94[ASN][1000 genomes]
rs11158578	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11623603	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11624558	0.82[ASN][1000 genomes]
rs11626496	0.85[EUR][1000 genomes]
rs11626720	0.82[ASN][1000 genomes]
rs11627540	0.82[ASN][1000 genomes]
rs11627859	0.85[EUR][1000 genomes]
rs12100605	0.80[EUR][1000 genomes]
rs12880781	0.81[EUR][1000 genomes]
rs12884836	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12887607	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12888794	0.81[EUR][1000 genomes]
rs17102423	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17825846	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2093989	0.92[ASN][1000 genomes]
rs34062462	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35002541	0.84[EUR][1000 genomes]
rs35176994	0.82[EUR][1000 genomes]
rs4325478	0.82[ASN][1000 genomes]
rs4325479	0.80[ASN][1000 genomes]
rs4468529	0.82[ASN][1000 genomes]
rs4899161	0.83[ASN][1000 genomes]
rs4902363	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4902364	0.85[EUR][1000 genomes]
rs4902365	0.85[EUR][1000 genomes]
rs4902367	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61987429	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7156617	0.83[ASN][1000 genomes]
rs8009396	0.81[EUR][1000 genomes]
rs8009714	0.81[EUR][1000 genomes]
rs8015330	0.83[EUR][1000 genomes]
rs8018788	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs884683	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	esv1833060	chr14:65594460-65607642	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv989058	chr14:65601785-65607798	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3530651	chr14:65604499-65609897	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv564910	chr14:65604728-65607752	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv564911	chr14:65604728-65607817	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3529456	chr14:65605199-65609197	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3529457	chr14:65605199-65609197	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3426379	chr14:65605749-65609447	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3530649	chr14:65605997-65608335	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65605000-65609200	Weak transcription	Osteobl	bone
2	chr14:65605400-65608800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr14:65605400-65609000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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