Variant report

Variant	rs35176994
Chromosome Location	chr14:65596004-65596005
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65595405..65599836-chr14:65877134..65881265,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10873180	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10873181	0.83[EUR][1000 genomes]
rs10873182	0.83[EUR][1000 genomes]
rs10873183	0.81[EUR][1000 genomes]
rs10873185	0.80[EUR][1000 genomes]
rs11158572	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11158573	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11158574	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11158578	0.83[EUR][1000 genomes]
rs11625045	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11626156	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11626496	0.93[ASN][1000 genomes]
rs11627859	0.93[ASN][1000 genomes]
rs12147959	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12880781	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12884836	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12887607	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12888794	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17825846	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1953228	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2898863	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34062462	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35002541	0.96[ASN][1000 genomes]
rs35769504	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs45604339	0.83[ASN][1000 genomes]
rs4902358	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4902364	0.93[ASN][1000 genomes]
rs4902365	0.93[ASN][1000 genomes]
rs4902367	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55658675	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61987428	0.82[EUR][1000 genomes]
rs61987429	0.83[EUR][1000 genomes]
rs7143495	0.91[ASN][1000 genomes]
rs7144259	0.80[ASN][1000 genomes]
rs7154852	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7161394	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs762810	0.83[ASN][1000 genomes]
rs8004805	0.94[ASN][1000 genomes]
rs8009396	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8009714	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8015330	0.91[ASN][1000 genomes]
rs8181937	0.95[ASN][1000 genomes]
rs8181938	0.95[ASN][1000 genomes]
rs8181939	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs868814	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs884683	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs942627	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	esv1833060	chr14:65594460-65607642	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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