Variant report

Variant	rs45604339
Chromosome Location	chr14:65543102-65543103
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65542410..65545761-chr14:65567808..65570933,3	MCF-7	breast:
2	chr14:65534580..65538429-chr14:65542386..65544897,3	K562	blood:
3	chr14:65540391..65543232-chr14:65544493..65546797,2	K562	blood:
4	chr14:65542480..65545199-chr14:65545922..65548656,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000125952	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10151162	0.81[EUR][1000 genomes]
rs11158572	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11158573	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11158574	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1124751	0.81[EUR][1000 genomes]
rs1124752	0.81[EUR][1000 genomes]
rs11625045	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11626156	0.81[ASN][1000 genomes]
rs12147959	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1256417	0.84[EUR][1000 genomes]
rs1271582	0.81[EUR][1000 genomes]
rs12880781	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12887607	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12888794	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12893404	0.87[ASN][1000 genomes]
rs17825846	0.83[ASN][1000 genomes]
rs1953228	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1957948	0.85[EUR][1000 genomes]
rs1998688	0.84[EUR][1000 genomes]
rs2093989	0.89[EUR][1000 genomes]
rs2781373	0.81[EUR][1000 genomes]
rs2781374	0.81[EUR][1000 genomes]
rs35176994	0.83[ASN][1000 genomes]
rs35769504	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4899161	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4902357	0.86[EUR][1000 genomes]
rs4902358	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4902359	0.87[EUR][1000 genomes]
rs4902360	0.81[EUR][1000 genomes]
rs4902361	0.90[EUR][1000 genomes]
rs55658675	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7143495	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7144259	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7150646	0.87[EUR][1000 genomes]
rs7154852	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7156617	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7159443	0.84[EUR][1000 genomes]
rs7161394	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs762810	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8004805	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8009396	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8009714	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8010213	0.84[EUR][1000 genomes]
rs8181937	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8181938	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8181939	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs868814	0.81[ASN][1000 genomes]
rs884683	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs942626	0.84[EUR][1000 genomes]
rs942627	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs942628	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65471200-65546200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr14:65501800-65543200	Weak transcription	Fetal Brain Male	brain
3	chr14:65527600-65545600	Strong transcription	Primary T cells from cord blood	blood
4	chr14:65527800-65553600	Strong transcription	Dnd41	blood
5	chr14:65528800-65555400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr14:65530000-65553000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr14:65530400-65543200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr14:65534000-65553600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr14:65534600-65546000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr14:65534800-65553400	Strong transcription	Thymus	Thymus
11	chr14:65535600-65545600	Strong transcription	Fetal Stomach	stomach
12	chr14:65535600-65547000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr14:65536000-65553600	Strong transcription	Fetal Thymus	thymus
14	chr14:65536600-65543200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:65537600-65543200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr14:65538200-65544600	Strong transcription	HSMM	muscle
17	chr14:65538400-65545000	Strong transcription	GM12878-XiMat	blood
18	chr14:65538400-65545600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr14:65538600-65547000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr14:65538600-65547000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr14:65538800-65545600	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr14:65538800-65553600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr14:65538800-65562000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr14:65539000-65544800	Strong transcription	Fetal Brain Female	brain
25	chr14:65539000-65551000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr14:65539000-65562400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr14:65539200-65543800	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr14:65539200-65545400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr14:65539200-65548800	Strong transcription	NHEK	skin
30	chr14:65539200-65550800	Strong transcription	Fetal Muscle Trunk	muscle
31	chr14:65539200-65551400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr14:65539400-65545000	Strong transcription	NHLF	lung
33	chr14:65539400-65551000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr14:65539400-65552400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr14:65539600-65543400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr14:65539600-65547200	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr14:65539600-65547400	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr14:65539600-65563200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr14:65539800-65544800	Genic enhancers	Left Ventricle	heart
40	chr14:65539800-65547200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr14:65539800-65547400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr14:65539800-65553200	Strong transcription	Cortex derived primary cultured neurospheres	brain
43	chr14:65540000-65546000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr14:65540200-65544800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr14:65540400-65543400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr14:65540400-65543600	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
47	chr14:65540400-65543800	Genic enhancers	Lung	lung
48	chr14:65540400-65545000	Strong transcription	Brain Germinal Matrix	brain
49	chr14:65540400-65548000	Strong transcription	Osteobl	bone
50	chr14:65540800-65543400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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