Variant report

Variant	rs7161394
Chromosome Location	chr14:65563309-65563310
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65560947..65564608-chr14:65566060..65569242,4	K562	blood:
2	chr14:65562648..65566142-chr14:65569312..65572433,3	K562	blood:
3	chr14:65558796..65564739-chr14:65566972..65570414,12	MCF-7	breast:
4	chr14:65557283..65560955-chr14:65563018..65566025,3	K562	blood:
5	chr14:65550861..65552492-chr14:65562559..65565476,2	MCF-7	breast:
6	chr14:65560947..65564339-chr14:65566060..65569042,5	K562	blood:
7	chr14:65563116..65565005-chr14:65565094..65566679,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000125952	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10151162	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs11158572	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11158573	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11158574	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1124751	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs1124752	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs11625045	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11626156	0.93[ASN][1000 genomes]
rs11626496	0.88[ASN][1000 genomes]
rs11627859	0.88[ASN][1000 genomes]
rs12147959	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1256417	0.87[EUR][1000 genomes]
rs1270074	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs1271582	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs12880781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12884836	0.87[ASN][1000 genomes]
rs12887607	0.96[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12888794	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12893404	0.82[ASN][1000 genomes]
rs17825846	0.91[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1953228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1953232	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs1957948	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs1998688	0.84[CEU][hapmap];0.87[EUR][1000 genomes]
rs2093989	0.92[EUR][1000 genomes]
rs2763888	0.81[EUR][1000 genomes]
rs2781373	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs2781374	0.84[EUR][1000 genomes]
rs2898863	0.91[ASN][1000 genomes]
rs34062462	0.91[ASN][1000 genomes]
rs35002541	0.91[ASN][1000 genomes]
rs35176994	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35769504	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs45604339	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4899161	0.92[CEU][hapmap];0.84[CHB][hapmap];0.90[EUR][1000 genomes]
rs4902357	0.83[EUR][1000 genomes]
rs4902358	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4902359	0.84[EUR][1000 genomes]
rs4902360	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs4902361	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs4902364	0.88[ASN][1000 genomes]
rs4902365	0.88[ASN][1000 genomes]
rs4902367	0.91[ASN][1000 genomes]
rs55658675	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7143495	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7144259	0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7150646	0.84[EUR][1000 genomes]
rs7154852	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7156617	0.92[CEU][hapmap];0.84[CHB][hapmap];0.91[EUR][1000 genomes]
rs7159443	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs762810	0.87[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8004805	0.80[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8009396	0.82[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8009714	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8010213	0.87[EUR][1000 genomes]
rs8015330	0.86[ASN][1000 genomes]
rs8181937	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8181938	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8181939	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs868814	0.84[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs884683	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs942626	0.84[CEU][hapmap];0.87[EUR][1000 genomes]
rs942627	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs942628	0.84[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65548800-65564800	Strong transcription	HUVEC	blood vessel
2	chr14:65553400-65565200	Strong transcription	Hela-S3	cervix
3	chr14:65554400-65563400	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr14:65555000-65565400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr14:65555800-65565200	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr14:65556400-65567200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr14:65556400-65567600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:65556400-65569000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr14:65556800-65567800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr14:65557000-65564400	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr14:65557000-65565400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr14:65557200-65566800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr14:65557600-65568000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr14:65558200-65563400	Strong transcription	Primary B cells from cord blood	blood
15	chr14:65558800-65564000	Genic enhancers	Fetal Intestine Small	intestine
16	chr14:65558800-65565200	Enhancers	Stomach Mucosa	stomach
17	chr14:65560400-65563800	Genic enhancers	Primary T cells fromperipheralblood	blood
18	chr14:65560400-65563800	Enhancers	Psoas Muscle	Psoas
19	chr14:65560400-65564800	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr14:65560400-65565000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
21	chr14:65560600-65563600	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr14:65560600-65564200	Enhancers	Right Ventricle	heart
23	chr14:65560600-65567800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr14:65560600-65568000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr14:65560800-65564200	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr14:65560800-65565000	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
27	chr14:65560800-65568400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr14:65561000-65563800	Enhancers	Right Atrium	heart
29	chr14:65561000-65564800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr14:65561000-65567400	Weak transcription	A549	lung
31	chr14:65561000-65567800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr14:65561200-65563600	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr14:65561200-65563800	Genic enhancers	Fetal Muscle Leg	muscle
34	chr14:65561200-65564600	Genic enhancers	Primary neutrophils fromperipheralblood	blood
35	chr14:65561400-65563600	Enhancers	Brain Germinal Matrix	brain
36	chr14:65561600-65563800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
37	chr14:65561600-65564000	Enhancers	Brain Cingulate Gyrus	brain
38	chr14:65561600-65564800	Genic enhancers	Primary T cells from cord blood	blood
39	chr14:65561600-65567800	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr14:65561600-65568400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr14:65561800-65564600	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr14:65561800-65564800	Genic enhancers	Primary hematopoietic stem cells	blood
43	chr14:65561800-65565000	Enhancers	Brain Substantia Nigra	brain
44	chr14:65561800-65565600	Enhancers	Brain Anterior Caudate	brain
45	chr14:65561800-65566800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
46	chr14:65562000-65563600	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr14:65562000-65563600	Enhancers	Brain Inferior Temporal Lobe	brain
48	chr14:65562000-65563800	Enhancers	Brain Hippocampus Middle	brain
49	chr14:65562000-65564200	Enhancers	Gastric	stomach
50	chr14:65562000-65565200	Enhancers	Duodenum Smooth Muscle	Duodenum

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