Variant report

Variant	rs12888794
Chromosome Location	chr14:65577827-65577828
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65567727..65571769-chr14:65574635..65579781,8	MCF-7	breast:
2	chr14:65574956..65578020-chr14:65578405..65580427,3	MCF-7	breast:
3	chr14:65569605..65571519-chr14:65575666..65579395,3	MCF-7	breast:
4	chr14:65571192..65573054-chr14:65576225..65578951,2	K562	blood:

Variant related genes	Relation type
ENSG00000125952	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10151162	0.85[EUR][1000 genomes]
rs10873180	0.82[EUR][1000 genomes]
rs10873181	0.81[EUR][1000 genomes]
rs10873182	0.81[EUR][1000 genomes]
rs11158572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11158573	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11158574	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11158578	0.81[EUR][1000 genomes]
rs1124751	0.85[EUR][1000 genomes]
rs1124752	0.85[EUR][1000 genomes]
rs11625045	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11626156	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11626496	0.88[ASN][1000 genomes]
rs11627859	0.88[ASN][1000 genomes]
rs12147959	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1256417	0.82[EUR][1000 genomes]
rs12880781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12884836	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12887607	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17825846	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1953228	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1953232	0.86[EUR][1000 genomes]
rs1957948	0.81[EUR][1000 genomes]
rs1998688	0.82[EUR][1000 genomes]
rs2093989	0.87[EUR][1000 genomes]
rs2763888	0.86[EUR][1000 genomes]
rs2781373	0.84[EUR][1000 genomes]
rs2781374	0.85[EUR][1000 genomes]
rs2898863	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34062462	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35002541	0.91[ASN][1000 genomes]
rs35176994	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35769504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs45604339	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4899161	0.85[EUR][1000 genomes]
rs4902358	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4902361	0.85[EUR][1000 genomes]
rs4902364	0.88[ASN][1000 genomes]
rs4902365	0.88[ASN][1000 genomes]
rs4902367	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55658675	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61987428	0.81[EUR][1000 genomes]
rs61987429	0.81[EUR][1000 genomes]
rs7143495	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7144259	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7154852	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7156617	0.86[EUR][1000 genomes]
rs7159443	0.82[EUR][1000 genomes]
rs7161394	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs762810	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8004805	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8009396	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8009714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8010213	0.82[EUR][1000 genomes]
rs8015330	0.86[ASN][1000 genomes]
rs8181937	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8181938	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8181939	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs868814	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs884683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs942626	0.82[EUR][1000 genomes]
rs942627	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65577600-65581000	Weak transcription	K562	blood

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