Variant report

Variant	rs884683
Chromosome Location	chr14:65574482-65574483
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65568317..65571529-chr14:65572429..65574819,6	K562	blood:
2	chr14:65568317..65571554-chr14:65571608..65574819,5	K562	blood:

Variant related genes	Relation type
ENSG00000125952	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10151162	0.83[CEU][hapmap];0.85[EUR][1000 genomes]
rs10873180	0.82[EUR][1000 genomes]
rs10873181	0.81[EUR][1000 genomes]
rs10873182	0.81[EUR][1000 genomes]
rs11158572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158573	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158574	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158578	0.81[EUR][1000 genomes]
rs1124751	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs1124752	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs11625045	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11626156	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11626496	0.90[ASN][1000 genomes]
rs11627859	0.90[ASN][1000 genomes]
rs12147959	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1256417	0.82[EUR][1000 genomes]
rs1270074	0.83[CEU][hapmap]
rs1271582	0.82[CEU][hapmap]
rs12880781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12884836	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12887607	0.96[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12888794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12893404	0.80[ASN][1000 genomes]
rs17825846	0.90[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1953228	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1953232	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs1957948	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs1998688	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs2093989	0.87[EUR][1000 genomes]
rs2763888	0.86[EUR][1000 genomes]
rs2781373	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs2781374	0.85[EUR][1000 genomes]
rs2898863	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34062462	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35002541	0.94[ASN][1000 genomes]
rs35176994	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35769504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs45604339	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4899161	0.91[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes]
rs4902358	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4902360	0.82[CEU][hapmap]
rs4902361	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs4902364	0.90[ASN][1000 genomes]
rs4902365	0.90[ASN][1000 genomes]
rs4902367	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55658675	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61987428	0.81[EUR][1000 genomes]
rs61987429	0.81[EUR][1000 genomes]
rs7143495	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7144259	0.83[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7154852	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7156617	0.91[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes]
rs7159443	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs7161394	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs762810	0.86[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8004805	1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8009396	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8009714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8010213	0.82[EUR][1000 genomes]
rs8015330	0.88[ASN][1000 genomes]
rs8181937	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8181938	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8181939	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs868814	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs942626	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs942627	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs942628	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65572400-65575000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr14:65572800-65574800	Enhancers	Primary hematopoietic stem cells	blood
3	chr14:65573200-65574800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr14:65573400-65574600	Enhancers	GM12878-XiMat	blood
5	chr14:65574000-65574600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr14:65574000-65574600	Flanking Active TSS	K562	blood
7	chr14:65574200-65574800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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