Variant report

Variant	rs10873181
Chromosome Location	chr14:65604459-65604460
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10873180	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10873182	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10873183	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10873185	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11158572	0.81[EUR][1000 genomes]
rs11158573	0.82[EUR][1000 genomes]
rs11158574	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs11158577	0.92[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs11158578	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11623603	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11624558	0.82[ASN][1000 genomes]
rs11625045	0.91[CEU][hapmap]
rs11626496	0.85[EUR][1000 genomes]
rs11626720	0.82[ASN][1000 genomes]
rs11627540	0.82[ASN][1000 genomes]
rs11627859	0.85[EUR][1000 genomes]
rs12100605	0.81[EUR][1000 genomes]
rs12880781	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs12884836	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12887607	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12888794	0.81[EUR][1000 genomes]
rs17102423	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17825846	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2093989	0.92[ASN][1000 genomes]
rs34062462	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35002541	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35176994	0.83[EUR][1000 genomes]
rs35769504	0.81[EUR][1000 genomes]
rs4325478	0.82[ASN][1000 genomes]
rs4325479	0.80[ASN][1000 genomes]
rs4468529	0.82[ASN][1000 genomes]
rs4899161	0.83[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4902358	0.91[CEU][hapmap]
rs4902361	0.84[CEU][hapmap]
rs4902363	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4902364	0.85[EUR][1000 genomes]
rs4902365	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4902367	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61987428	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987429	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7143495	0.91[CEU][hapmap]
rs7156617	0.83[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7159443	0.80[CEU][hapmap]
rs7161394	0.92[CEU][hapmap]
rs8004805	0.80[CEU][hapmap]
rs8009396	0.81[EUR][1000 genomes]
rs8009714	0.81[EUR][1000 genomes]
rs8015330	0.84[EUR][1000 genomes]
rs8018788	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8181939	0.91[CEU][hapmap]
rs868814	0.84[CEU][hapmap]
rs884683	0.91[CEU][hapmap];0.80[JPT][hapmap];0.81[EUR][1000 genomes]
rs942627	0.92[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	esv1833060	chr14:65594460-65607642	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv989058	chr14:65601785-65607798	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65601600-65605400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr14:65602000-65604600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr14:65602600-65604600	Weak transcription	Fetal Intestine Large	intestine
4	chr14:65604200-65605000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr14:65604400-65604800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr14:65604400-65604800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr14:65604400-65604800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:65604400-65604800	Enhancers	Colonic Mucosa	Colon
9	chr14:65604400-65605000	Enhancers	HMEC	breast
10	chr14:65604400-65605000	Enhancers	NHEK	skin
11	chr14:65604400-65605000	Enhancers	Osteobl	bone
12	chr14:65604400-65605200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr14:65604400-65605200	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr14:65604400-65605200	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr14:65604400-65605400	Enhancers	Fetal Intestine Small	intestine

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