Variant report

Variant	rs11626720
Chromosome Location	chr14:65538104-65538105
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65534580..65538429-chr14:65542386..65544897,3	K562	blood:
2	chr14:65536598..65540126-chr14:65544399..65547466,3	MCF-7	breast:
3	chr14:65524935..65527160-chr14:65537438..65539192,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10873180	0.82[ASN][1000 genomes]
rs10873181	0.82[ASN][1000 genomes]
rs10873182	0.82[ASN][1000 genomes]
rs10873183	0.82[ASN][1000 genomes]
rs11158577	0.82[ASN][1000 genomes]
rs11158578	0.82[ASN][1000 genomes]
rs1256417	0.80[EUR][1000 genomes]
rs1957948	0.82[EUR][1000 genomes]
rs1998688	0.80[EUR][1000 genomes]
rs2093989	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4899161	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61987428	0.82[ASN][1000 genomes]
rs61987429	0.82[ASN][1000 genomes]
rs7144259	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7156617	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7159443	0.80[EUR][1000 genomes]
rs8010213	0.80[EUR][1000 genomes]
rs942626	0.80[EUR][1000 genomes]
rs942628	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11626720	OBSCN	trans	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65470400-65539600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr14:65471200-65546200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr14:65501800-65543200	Weak transcription	Fetal Brain Male	brain
4	chr14:65508600-65542000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr14:65523000-65538200	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr14:65527200-65539200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr14:65527400-65539600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr14:65527400-65540400	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr14:65527600-65540800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr14:65527600-65545600	Strong transcription	Primary T cells from cord blood	blood
11	chr14:65527800-65553600	Strong transcription	Dnd41	blood
12	chr14:65528800-65555400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr14:65529600-65541600	Weak transcription	NH-A	brain
14	chr14:65529800-65543000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr14:65530000-65553000	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr14:65530400-65539000	Weak transcription	HUVEC	blood vessel
17	chr14:65530400-65543200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr14:65531200-65541400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr14:65532400-65539200	Weak transcription	K562	blood
20	chr14:65532400-65539600	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr14:65532600-65538200	Weak transcription	Fetal Kidney	kidney
22	chr14:65532600-65540400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr14:65532600-65542400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr14:65533200-65539400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr14:65533200-65541200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr14:65533200-65541600	Weak transcription	Hela-S3	cervix
27	chr14:65533200-65542000	Weak transcription	A549	lung
28	chr14:65533400-65542200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr14:65534000-65553600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr14:65534400-65542200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr14:65534600-65546000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr14:65534800-65553400	Strong transcription	Thymus	Thymus
33	chr14:65535200-65538200	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr14:65535200-65540400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr14:65535400-65539600	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr14:65535400-65541600	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr14:65535600-65538400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr14:65535600-65539000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr14:65535600-65540400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr14:65535600-65545600	Strong transcription	Fetal Stomach	stomach
41	chr14:65535600-65547000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr14:65535800-65539200	Genic enhancers	Fetal Muscle Trunk	muscle
43	chr14:65536000-65553600	Strong transcription	Fetal Thymus	thymus
44	chr14:65536200-65540800	Strong transcription	Primary T helper cells PMA-I stimulated	--
45	chr14:65536200-65541800	Enhancers	Fetal Heart	heart
46	chr14:65536200-65541800	Genic enhancers	Fetal Muscle Leg	muscle
47	chr14:65536400-65538600	Strong transcription	Osteobl	bone
48	chr14:65536600-65538800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
49	chr14:65536600-65539600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr14:65536600-65539600	Enhancers	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links