Variant report

Variant	rs7144259
Chromosome Location	chr14:65537559-65537560
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65534580..65538429-chr14:65542386..65544897,3	K562	blood:
2	chr14:65536598..65540126-chr14:65544399..65547466,3	MCF-7	breast:
3	chr14:65524935..65527160-chr14:65537438..65539192,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11158572	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11158573	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11158574	0.80[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11624169	0.82[CEU][hapmap]
rs11625045	0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11626720	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12880781	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12887607	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12888794	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12893404	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17825846	0.81[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1953228	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35176994	0.80[ASN][1000 genomes]
rs35769504	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs45604339	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4902358	0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55658675	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7143495	0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7154852	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7161394	0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs762810	0.90[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8004805	0.94[JPT][hapmap]
rs8009396	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs8009714	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs8181937	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs8181938	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs8181939	0.86[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs868814	0.91[CHB][hapmap];0.94[JPT][hapmap]
rs884683	0.83[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs942627	0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65470400-65539600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr14:65471200-65546200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr14:65501800-65543200	Weak transcription	Fetal Brain Male	brain
4	chr14:65508600-65542000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr14:65523000-65538200	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr14:65527200-65539200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr14:65527400-65538000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr14:65527400-65539600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr14:65527400-65540400	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr14:65527600-65538000	Strong transcription	Primary B cells from cord blood	blood
11	chr14:65527600-65540800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr14:65527600-65545600	Strong transcription	Primary T cells from cord blood	blood
13	chr14:65527800-65537600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr14:65527800-65553600	Strong transcription	Dnd41	blood
15	chr14:65528800-65555400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr14:65529600-65537800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr14:65529600-65541600	Weak transcription	NH-A	brain
18	chr14:65529800-65543000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr14:65530000-65553000	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr14:65530400-65539000	Weak transcription	HUVEC	blood vessel
21	chr14:65530400-65543200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr14:65531200-65541400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr14:65532400-65539200	Weak transcription	K562	blood
24	chr14:65532400-65539600	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr14:65532600-65538200	Weak transcription	Fetal Kidney	kidney
26	chr14:65532600-65540400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr14:65532600-65542400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr14:65533200-65539400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr14:65533200-65541200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr14:65533200-65541600	Weak transcription	Hela-S3	cervix
31	chr14:65533200-65542000	Weak transcription	A549	lung
32	chr14:65533400-65542200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr14:65534000-65537600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr14:65534000-65553600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr14:65534400-65542200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr14:65534600-65546000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr14:65534800-65553400	Strong transcription	Thymus	Thymus
38	chr14:65535200-65537800	Strong transcription	Primary B cells from peripheral blood	blood
39	chr14:65535200-65538200	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr14:65535200-65540400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr14:65535400-65537600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr14:65535400-65537600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr14:65535400-65539600	Strong transcription	Primary neutrophils fromperipheralblood	blood
44	chr14:65535400-65541600	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr14:65535600-65537600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr14:65535600-65537600	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr14:65535600-65538400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr14:65535600-65539000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr14:65535600-65540400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr14:65535600-65545600	Strong transcription	Fetal Stomach	stomach

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