Variant report

Variant	rs8004805
Chromosome Location	chr14:65579720-65579721
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65567727..65571769-chr14:65574635..65579781,8	MCF-7	breast:
2	chr14:65574956..65578020-chr14:65578405..65580427,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000125952	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11158572	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11158573	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11158574	0.90[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11158577	0.87[CEU][hapmap];0.83[JPT][hapmap];0.84[EUR][1000 genomes]
rs11625045	0.83[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11626156	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11626496	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11627859	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12100605	0.81[EUR][1000 genomes]
rs12147959	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12880781	0.83[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12884836	0.86[ASN][1000 genomes]
rs12887607	0.84[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12888794	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17102423	0.82[EUR][1000 genomes]
rs17825846	0.83[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs1953228	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2151755	0.86[EUR][1000 genomes]
rs2781375	0.85[EUR][1000 genomes]
rs2898863	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34062462	0.90[ASN][1000 genomes]
rs34459643	0.88[EUR][1000 genomes]
rs35002541	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35176994	0.94[ASN][1000 genomes]
rs35520739	0.86[EUR][1000 genomes]
rs35769504	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs45604339	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4899161	0.82[CHB][hapmap]
rs4902358	0.83[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4902362	0.80[EUR][1000 genomes]
rs4902364	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4902365	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4902367	0.90[ASN][1000 genomes]
rs55658675	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7143495	0.83[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs7144259	0.94[JPT][hapmap]
rs7154852	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7156617	0.82[CHB][hapmap]
rs7161394	0.80[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs762810	0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs8005829	0.86[EUR][1000 genomes]
rs8009396	1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8009714	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8015330	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8181937	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8181938	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8181939	0.82[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs868814	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs884683	1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs942627	0.80[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs942629	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65577600-65581000	Weak transcription	K562	blood

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