Variant report

Variant	rs2898863
Chromosome Location	chr14:65597509-65597510
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65568387..65571112-chr14:65596927..65600047,3	MCF-7	breast:
2	chr14:65595405..65599836-chr14:65877134..65881265,3	MCF-7	breast:
3	chr14:65584828..65586743-chr14:65596028..65597977,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000125952	Chromatin interaction
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10873180	0.80[AMR][1000 genomes]
rs11158572	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11158573	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11158574	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11158577	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11623603	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11625045	0.89[ASN][1000 genomes]
rs11626156	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11626496	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11627859	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12100605	0.81[EUR][1000 genomes]
rs12147959	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12880781	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12884836	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12887607	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12888794	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17102423	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17825846	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1953228	0.91[ASN][1000 genomes]
rs34062462	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs34459643	0.81[EUR][1000 genomes]
rs35002541	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35176994	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35769504	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4902358	0.81[ASN][1000 genomes]
rs4902362	0.85[EUR][1000 genomes]
rs4902363	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4902364	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902365	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902367	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs55658675	0.91[ASN][1000 genomes]
rs7143495	0.88[ASN][1000 genomes]
rs7146939	0.84[EUR][1000 genomes]
rs7154852	0.91[ASN][1000 genomes]
rs7161394	0.91[ASN][1000 genomes]
rs8004805	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8009396	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8009714	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8015330	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8018788	0.81[EUR][1000 genomes]
rs8181937	0.91[ASN][1000 genomes]
rs8181938	0.91[ASN][1000 genomes]
rs8181939	0.91[ASN][1000 genomes]
rs868814	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs884683	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs942627	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	esv1833060	chr14:65594460-65607642	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65596800-65602600	Enhancers	Fetal Intestine Small	intestine
2	chr14:65597200-65597600	Weak transcription	Rectal Mucosa Donor 31	rectum

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