Variant report

Variant	rs34062462
Chromosome Location	chr14:65609151-65609152
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65600313..65602525-chr14:65607232..65610149,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10873180	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10873181	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10873182	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10873183	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10873185	0.93[EUR][1000 genomes]
rs11158572	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11158573	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11158574	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11158578	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11625045	0.89[ASN][1000 genomes]
rs11626156	0.91[ASN][1000 genomes]
rs11626496	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11627859	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12100605	0.81[EUR][1000 genomes]
rs12147959	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12880781	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12884836	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12887607	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12888794	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17102423	0.85[EUR][1000 genomes]
rs17825846	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1953228	0.91[ASN][1000 genomes]
rs2898863	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs35002541	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35176994	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35769504	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4902358	0.81[ASN][1000 genomes]
rs4902364	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902365	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902367	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55658675	0.91[ASN][1000 genomes]
rs61987428	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61987429	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7143495	0.88[ASN][1000 genomes]
rs7154852	0.91[ASN][1000 genomes]
rs7161394	0.91[ASN][1000 genomes]
rs8004805	0.90[ASN][1000 genomes]
rs8009396	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8009714	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8015330	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8181937	0.91[ASN][1000 genomes]
rs8181938	0.91[ASN][1000 genomes]
rs8181939	0.91[ASN][1000 genomes]
rs868814	0.91[ASN][1000 genomes]
rs884683	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs942627	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	esv3530651	chr14:65604499-65609897	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3529456	chr14:65605199-65609197	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3529457	chr14:65605199-65609197	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3426379	chr14:65605749-65609447	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65605000-65609200	Weak transcription	Osteobl	bone
2	chr14:65608800-65609200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:65608800-65609600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr14:65608800-65609800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr14:65608800-65610000	Enhancers	HSMMtube	muscle
6	chr14:65609000-65609600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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