Variant report

Variant	rs12887607
Chromosome Location	chr14:65596887-65596888
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65595405..65599836-chr14:65877134..65881265,3	MCF-7	breast:
2	chr14:65584828..65586743-chr14:65596028..65597977,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10151162	0.80[CEU][hapmap]
rs10873180	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10873181	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10873182	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10873183	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10873185	0.85[EUR][1000 genomes]
rs11158572	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11158573	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11158574	0.95[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11158577	0.83[CHB][hapmap];0.81[EUR][1000 genomes]
rs11158578	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11625045	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11626156	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11626496	0.93[ASN][1000 genomes]
rs11627859	0.93[ASN][1000 genomes]
rs12147959	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1270074	0.80[CEU][hapmap]
rs12880781	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12884836	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12888794	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17825846	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1953228	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2898863	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34062462	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35002541	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35176994	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35769504	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs45604339	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4899161	0.87[CEU][hapmap]
rs4902358	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4902361	0.88[CEU][hapmap]
rs4902364	0.93[ASN][1000 genomes]
rs4902365	0.93[ASN][1000 genomes]
rs4902367	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55658675	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61987428	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61987429	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7143495	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7144259	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7154852	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7156617	0.87[CEU][hapmap]
rs7159443	0.84[CEU][hapmap]
rs7161394	0.96[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs762810	0.83[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8004805	0.84[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8009396	0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8009714	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8015330	0.91[ASN][1000 genomes]
rs8181937	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8181938	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8181939	0.96[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs868814	0.88[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs884683	0.96[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs942627	0.96[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	esv1833060	chr14:65594460-65607642	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65596800-65597200	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr14:65596800-65602600	Enhancers	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links