Variant report

Variant	rs12100605
Chromosome Location	chr14:65610039-65610040
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10873180	0.81[EUR][1000 genomes]
rs10873181	0.81[EUR][1000 genomes]
rs10873182	0.81[EUR][1000 genomes]
rs11158578	0.81[EUR][1000 genomes]
rs11623603	0.83[EUR][1000 genomes]
rs11626156	0.82[EUR][1000 genomes]
rs11626496	0.87[EUR][1000 genomes]
rs11627859	0.87[EUR][1000 genomes]
rs17102423	0.91[EUR][1000 genomes]
rs2898863	0.81[EUR][1000 genomes]
rs34062462	0.81[EUR][1000 genomes]
rs35002541	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4902363	0.83[EUR][1000 genomes]
rs4902364	0.87[EUR][1000 genomes]
rs4902365	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4902367	0.82[EUR][1000 genomes]
rs61987428	0.80[EUR][1000 genomes]
rs61987429	0.81[EUR][1000 genomes]
rs8004805	0.81[EUR][1000 genomes]
rs8015330	0.86[EUR][1000 genomes]
rs8018788	0.85[EUR][1000 genomes]
rs868814	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65609200-65612000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr14:65609200-65612800	Enhancers	Fetal Brain Male	brain
3	chr14:65609400-65610800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr14:65609400-65611400	Enhancers	Fetal Lung	lung
5	chr14:65609600-65612000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr14:65610000-65610200	Enhancers	Fetal Brain Female	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links