Variant report

Variant	rs11623603
Chromosome Location	chr14:65602287-65602288
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65600572..65603233-chr14:65606608..65608580,2	MCF-7	breast:
2	chr14:65600313..65602525-chr14:65607232..65610149,2	MCF-7	breast:
3	chr14:65588712..65590660-chr14:65602083..65604440,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10873180	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10873181	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10873182	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10873183	0.97[ASN][1000 genomes]
rs10873185	0.94[ASN][1000 genomes]
rs11158577	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11158578	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11626156	0.83[EUR][1000 genomes]
rs11626496	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11627859	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12100605	0.83[EUR][1000 genomes]
rs12884836	0.82[EUR][1000 genomes]
rs17102423	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2093989	0.89[ASN][1000 genomes]
rs2151755	0.81[EUR][1000 genomes]
rs2781375	0.81[EUR][1000 genomes]
rs2898863	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34459643	0.80[EUR][1000 genomes]
rs35002541	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35520739	0.81[EUR][1000 genomes]
rs4899161	0.81[ASN][1000 genomes]
rs4902362	0.87[EUR][1000 genomes]
rs4902363	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902364	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4902365	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61987428	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61987429	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7146939	0.86[EUR][1000 genomes]
rs7156617	0.81[ASN][1000 genomes]
rs8005829	0.81[EUR][1000 genomes]
rs8015330	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8018788	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs868814	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	esv1833060	chr14:65594460-65607642	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv989058	chr14:65601785-65607798	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65596800-65602600	Enhancers	Fetal Intestine Small	intestine
2	chr14:65597800-65602600	Enhancers	Fetal Intestine Large	intestine
3	chr14:65598800-65604400	Weak transcription	Colonic Mucosa	Colon
4	chr14:65598800-65604400	Weak transcription	Osteobl	bone
5	chr14:65601400-65602400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr14:65601400-65602400	Enhancers	Rectal Mucosa Donor 29	rectum
7	chr14:65601600-65602400	Enhancers	Fetal Thymus	thymus
8	chr14:65601600-65602400	Enhancers	Dnd41	blood
9	chr14:65601600-65605400	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr14:65602000-65604400	Weak transcription	HMEC	breast
11	chr14:65602000-65604600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr14:65602200-65604200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr14:65602200-65604400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr14:65602200-65604400	Weak transcription	Rectal Mucosa Donor 31	rectum

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