Variant report

Variant	rs4902363
Chromosome Location	chr14:65601689-65601690
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65600572..65603233-chr14:65606608..65608580,2	MCF-7	breast:
2	chr14:65600313..65602525-chr14:65607232..65610149,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10143198	0.84[CEU][hapmap]
rs10873180	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10873181	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10873182	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10873183	0.97[ASN][1000 genomes]
rs10873185	0.94[ASN][1000 genomes]
rs11158574	0.81[CEU][hapmap]
rs11158577	1.00[ASW][hapmap];0.92[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11158578	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11623603	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11626156	0.83[EUR][1000 genomes]
rs11626496	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11627859	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12100605	0.83[EUR][1000 genomes]
rs12884836	0.82[EUR][1000 genomes]
rs17102423	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17825846	0.81[CEU][hapmap];0.86[MEX][hapmap];0.80[TSI][hapmap]
rs1957949	0.84[CEU][hapmap]
rs2093989	0.89[ASN][1000 genomes]
rs2151755	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs2781375	0.81[EUR][1000 genomes]
rs2898863	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34459643	0.80[EUR][1000 genomes]
rs35002541	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35520739	0.81[EUR][1000 genomes]
rs4899161	0.80[CEU][hapmap];0.84[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.80[MEX][hapmap];0.81[ASN][1000 genomes]
rs4902362	0.87[EUR][1000 genomes]
rs4902364	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4902365	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61987428	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61987429	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7146939	0.86[EUR][1000 genomes]
rs7156617	0.80[CEU][hapmap];0.84[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.80[MEX][hapmap];0.81[ASN][1000 genomes]
rs8004805	0.87[CEU][hapmap];0.84[JPT][hapmap]
rs8005829	0.81[EUR][1000 genomes]
rs8015330	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8018788	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs868814	0.88[CEU][hapmap];0.81[GIH][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes]
rs942629	0.84[CEU][hapmap]
rs998247	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	esv1833060	chr14:65594460-65607642	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs4902363	MAX	cis	parietal	SCAN
rs4902363	SIX4	cis	cerebellum	SCAN
rs4902363	RAB15	cis	cerebellum	SCAN
rs4902363	MAX	cis	cerebellum	SCAN
rs4902363	GPX2	cis	cerebellum	SCAN
rs4902363	WDR89	cis	cerebellum	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65596800-65602600	Enhancers	Fetal Intestine Small	intestine
2	chr14:65597800-65602600	Enhancers	Fetal Intestine Large	intestine
3	chr14:65598200-65602200	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr14:65598800-65601800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr14:65598800-65604400	Weak transcription	Colonic Mucosa	Colon
6	chr14:65598800-65604400	Weak transcription	Osteobl	bone
7	chr14:65599000-65601800	Weak transcription	NHEK	skin
8	chr14:65599200-65602000	Enhancers	HepG2	liver
9	chr14:65601400-65601800	Enhancers	Duodenum Mucosa	Duodenum
10	chr14:65601400-65602000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr14:65601400-65602400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr14:65601400-65602400	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr14:65601600-65602000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr14:65601600-65602200	Enhancers	Primary T cells fromperipheralblood	blood
15	chr14:65601600-65602200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr14:65601600-65602400	Enhancers	Fetal Thymus	thymus
17	chr14:65601600-65602400	Enhancers	Dnd41	blood
18	chr14:65601600-65605400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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