Variant report

Variant	rs10143198
Chromosome Location	chr14:65555471-65555472
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65544834..65549029-chr14:65550819..65555965,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259118	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10151162	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11158574	0.83[CEU][hapmap]
rs11158577	0.84[CEU][hapmap]
rs1124751	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1124752	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12433870	0.86[YRI][hapmap]
rs1256417	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1270074	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1271582	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1953232	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1957948	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1957949	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1998688	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2093989	0.85[EUR][1000 genomes]
rs2151755	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2296316	0.81[CEU][hapmap]
rs2763888	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2781373	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2781374	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2781375	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34459643	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35410051	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35520739	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4899161	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs4902357	0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902359	0.81[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902360	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4902361	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4902362	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7145112	0.85[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7146939	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7150646	0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7152277	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7156617	0.81[CEU][hapmap];0.84[EUR][1000 genomes]
rs7158239	0.80[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7159443	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8005829	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8008095	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8010213	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8015921	0.80[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8181939	0.80[CEU][hapmap]
rs868814	0.81[CEU][hapmap]
rs942626	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs942628	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs942629	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.82[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs998247	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65538800-65562000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr14:65539000-65562400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr14:65539600-65563200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr14:65545400-65563000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:65546200-65562400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr14:65546400-65562400	Strong transcription	Placenta	Placenta
7	chr14:65548600-65561800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr14:65548800-65562000	Strong transcription	Liver	Liver
9	chr14:65548800-65563200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr14:65548800-65564800	Strong transcription	HUVEC	blood vessel
11	chr14:65549000-65559000	Strong transcription	Duodenum Mucosa	Duodenum
12	chr14:65549600-65562400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr14:65549800-65558800	Weak transcription	Stomach Mucosa	stomach
14	chr14:65550000-65557400	Strong transcription	Rectal Mucosa Donor 31	rectum
15	chr14:65551000-65560400	Weak transcription	Right Atrium	heart
16	chr14:65551400-65560800	Strong transcription	Duodenum Smooth Muscle	Duodenum
17	chr14:65551600-65557200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr14:65551600-65557600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr14:65551800-65557000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
20	chr14:65552000-65556400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
21	chr14:65552000-65557000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr14:65552200-65556200	ZNF genes & repeats	Fetal Intestine Small	intestine
23	chr14:65552200-65556400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
24	chr14:65552200-65556800	ZNF genes & repeats	GM12878-XiMat	blood
25	chr14:65552200-65561800	Strong transcription	Fetal Lung	lung
26	chr14:65552200-65562000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr14:65552400-65556400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr14:65552400-65556400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr14:65552400-65556400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
30	chr14:65552400-65556400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
31	chr14:65552400-65557000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
32	chr14:65552400-65557000	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr14:65552400-65557200	Strong transcription	HepG2	liver
34	chr14:65552400-65557600	Strong transcription	HSMMtube	muscle
35	chr14:65552400-65560400	Strong transcription	Rectal Smooth Muscle	rectum
36	chr14:65552400-65560800	Strong transcription	Brain Substantia Nigra	brain
37	chr14:65552400-65560800	Strong transcription	Stomach Smooth Muscle	stomach
38	chr14:65552400-65561000	Strong transcription	Adipose Nuclei	Adipose
39	chr14:65552400-65561400	Strong transcription	Brain Hippocampus Middle	brain
40	chr14:65552600-65556000	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
41	chr14:65552600-65556400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr14:65552600-65556600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
43	chr14:65552600-65558000	Weak transcription	Fetal Heart	heart
44	chr14:65552600-65558200	Strong transcription	Primary T killer memory cells from peripheral blood	blood
45	chr14:65552600-65560800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr14:65552600-65561600	Strong transcription	Spleen	Spleen
47	chr14:65552600-65562000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr14:65552600-65562000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr14:65552600-65562000	Strong transcription	Osteobl	bone
50	chr14:65552600-65562800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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