Variant report

Variant	rs7152277
Chromosome Location	chr14:65535391-65535392
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65534580..65538429-chr14:65542386..65544897,3	K562	blood:
2	chr14:65535365..65536995-chr14:65539588..65541589,2	K562	blood:
3	chr14:65518455..65520401-chr14:65534665..65537046,2	K562	blood:
4	chr14:65516810..65519484-chr14:65534795..65537184,2	MCF-7	breast:
5	chr14:65506811..65508511-chr14:65534721..65536903,2	K562	blood:

Variant related genes	Relation type
ENSG00000257365	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10143198	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1124751	0.88[AFR][1000 genomes]
rs1124752	0.86[AFR][1000 genomes]
rs1256417	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1271582	0.87[AFR][1000 genomes]
rs1957948	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1957949	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1998688	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2151755	0.82[EUR][1000 genomes]
rs2781373	0.84[AFR][1000 genomes]
rs2781374	0.84[AFR][1000 genomes]
rs2781375	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34459643	0.82[EUR][1000 genomes]
rs35410051	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35520739	0.82[EUR][1000 genomes]
rs4902357	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4902359	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4902360	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4902361	0.88[AFR][1000 genomes]
rs7145112	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7150646	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7158239	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7159443	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs8005829	0.82[EUR][1000 genomes]
rs8008095	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8010213	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs8011585	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8015921	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs942626	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs942628	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs942629	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs998247	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65470400-65539600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr14:65471200-65546200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr14:65501800-65543200	Weak transcription	Fetal Brain Male	brain
4	chr14:65508600-65542000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr14:65514800-65536200	Weak transcription	Small Intestine	intestine
6	chr14:65523000-65538200	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr14:65526400-65535400	Strong transcription	Fetal Intestine Small	intestine
8	chr14:65527200-65539200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr14:65527400-65538000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr14:65527400-65539600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr14:65527400-65540400	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr14:65527600-65538000	Strong transcription	Primary B cells from cord blood	blood
13	chr14:65527600-65540800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr14:65527600-65545600	Strong transcription	Primary T cells from cord blood	blood
15	chr14:65527800-65536600	Strong transcription	Stomach Smooth Muscle	stomach
16	chr14:65527800-65537600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr14:65527800-65553600	Strong transcription	Dnd41	blood
18	chr14:65528200-65536000	Weak transcription	Psoas Muscle	Psoas
19	chr14:65528200-65536200	Weak transcription	Stomach Mucosa	stomach
20	chr14:65528400-65536200	Weak transcription	Fetal Heart	heart
21	chr14:65528800-65555400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr14:65529600-65537200	Weak transcription	Colon Smooth Muscle	Colon
23	chr14:65529600-65537800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr14:65529600-65541600	Weak transcription	NH-A	brain
25	chr14:65529800-65536200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr14:65529800-65537400	Strong transcription	Adipose Nuclei	Adipose
27	chr14:65529800-65543000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr14:65530000-65553000	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr14:65530400-65539000	Weak transcription	HUVEC	blood vessel
30	chr14:65530400-65543200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr14:65531200-65541400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr14:65531400-65536400	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr14:65531600-65535400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr14:65532400-65535600	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr14:65532400-65537000	Weak transcription	HMEC	breast
36	chr14:65532400-65539200	Weak transcription	K562	blood
37	chr14:65532400-65539600	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr14:65532600-65538200	Weak transcription	Fetal Kidney	kidney
39	chr14:65532600-65540400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr14:65532600-65542400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr14:65532800-65536200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr14:65532800-65537200	Weak transcription	NHDF-Ad	bronchial
43	chr14:65533000-65535600	Weak transcription	HepG2	liver
44	chr14:65533000-65535600	Weak transcription	NHLF	lung
45	chr14:65533000-65536000	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr14:65533000-65536200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr14:65533000-65536200	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr14:65533000-65536200	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr14:65533000-65536200	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr14:65533000-65536200	Weak transcription	Brain Anterior Caudate	brain

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