Variant report

Variant	rs4902357
Chromosome Location	chr14:65542067-65542068
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65540391..65543232-chr14:65544493..65546797,2	K562	blood:
2	chr14:65539049..65542312-chr14:65547524..65550100,3	K562	blood:

Variant related genes	Relation type
ENSG00000259118	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10143198	0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10151162	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.94[YRI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11158574	0.82[CEU][hapmap]
rs1124751	0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1124752	0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11625045	0.82[EUR][1000 genomes]
rs1256417	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1270074	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1271582	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1953228	0.83[EUR][1000 genomes]
rs1953232	0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1957948	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1957949	0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1998688	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2093989	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2151755	0.82[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.84[YRI][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2763888	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2781373	0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2781374	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2781375	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35410051	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35520739	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs45604339	0.86[EUR][1000 genomes]
rs4899161	0.83[CEU][hapmap];0.90[EUR][1000 genomes]
rs4902358	0.84[EUR][1000 genomes]
rs4902359	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902360	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4902361	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4902362	0.84[ASN][1000 genomes]
rs55658675	0.82[EUR][1000 genomes]
rs7145112	0.85[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7150646	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7152277	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7154852	0.83[EUR][1000 genomes]
rs7156617	0.83[CEU][hapmap];0.91[EUR][1000 genomes]
rs7158239	0.90[CHB][hapmap];0.90[JPT][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7159443	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7161394	0.83[EUR][1000 genomes]
rs762810	0.82[EUR][1000 genomes]
rs8005829	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8008095	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8010213	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8015921	0.90[CHB][hapmap];0.90[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8181939	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs942626	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs942627	0.83[EUR][1000 genomes]
rs942628	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs942629	0.81[CEU][hapmap];0.85[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs998247	0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65471200-65546200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr14:65501800-65543200	Weak transcription	Fetal Brain Male	brain
3	chr14:65527600-65545600	Strong transcription	Primary T cells from cord blood	blood
4	chr14:65527800-65553600	Strong transcription	Dnd41	blood
5	chr14:65528800-65555400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr14:65529800-65543000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr14:65530000-65553000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr14:65530400-65543200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr14:65532600-65542400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr14:65533400-65542200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr14:65534000-65553600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr14:65534400-65542200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr14:65534600-65546000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr14:65534800-65553400	Strong transcription	Thymus	Thymus
15	chr14:65535600-65545600	Strong transcription	Fetal Stomach	stomach
16	chr14:65535600-65547000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr14:65536000-65553600	Strong transcription	Fetal Thymus	thymus
18	chr14:65536600-65543200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr14:65536800-65542800	Weak transcription	Fetal Lung	lung
20	chr14:65537000-65542400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr14:65537400-65542200	Enhancers	Right Ventricle	heart
22	chr14:65537600-65542800	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr14:65537600-65543200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr14:65537800-65542200	Enhancers	Stomach Mucosa	stomach
25	chr14:65537800-65542200	Weak transcription	HMEC	breast
26	chr14:65537800-65542600	Weak transcription	Brain Hippocampus Middle	brain
27	chr14:65538200-65542600	Enhancers	Right Atrium	heart
28	chr14:65538200-65544600	Strong transcription	HSMM	muscle
29	chr14:65538400-65542600	Genic enhancers	Sigmoid Colon	Sigmoid Colon
30	chr14:65538400-65545000	Strong transcription	GM12878-XiMat	blood
31	chr14:65538400-65545600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr14:65538600-65547000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr14:65538600-65547000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr14:65538800-65545600	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr14:65538800-65553600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr14:65538800-65562000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr14:65539000-65544800	Strong transcription	Fetal Brain Female	brain
38	chr14:65539000-65551000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr14:65539000-65562400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr14:65539200-65543800	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
41	chr14:65539200-65545400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr14:65539200-65548800	Strong transcription	NHEK	skin
43	chr14:65539200-65550800	Strong transcription	Fetal Muscle Trunk	muscle
44	chr14:65539200-65551400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr14:65539400-65542200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr14:65539400-65545000	Strong transcription	NHLF	lung
47	chr14:65539400-65551000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr14:65539400-65552400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr14:65539600-65543400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr14:65539600-65547200	Strong transcription	HUES6 Cell Line	embryonic stem cell

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