Variant report

Variant	rs2763888
Chromosome Location	chr14:65571493-65571494
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBL1XR1	chr14:65571473-65571494	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr14:65569733..65572500-chr14:65579946..65582085,4	MCF-7	breast:
2	chr14:65571192..65573054-chr14:65576225..65578951,2	K562	blood:
3	chr14:65569605..65571519-chr14:65575666..65579395,3	MCF-7	breast:
4	chr14:65451451..65454703-chr14:65567810..65571977,3	MCF-7	breast:

Variant related genes	Relation type
MAX	TF binding region
ENSG00000257365	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10143198	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10151162	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11158572	0.86[EUR][1000 genomes]
rs11158573	0.86[EUR][1000 genomes]
rs11158574	0.86[EUR][1000 genomes]
rs1124751	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1124752	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11625045	0.81[EUR][1000 genomes]
rs12147959	0.85[EUR][1000 genomes]
rs1256417	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1270074	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1271582	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12880781	0.86[EUR][1000 genomes]
rs12888794	0.86[EUR][1000 genomes]
rs1953228	0.81[EUR][1000 genomes]
rs1953232	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1957948	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1957949	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1998688	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2093989	0.89[EUR][1000 genomes]
rs2151755	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2781373	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2781374	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2781375	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34459643	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35520739	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35769504	0.86[EUR][1000 genomes]
rs4899161	0.86[EUR][1000 genomes]
rs4902357	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4902358	0.80[EUR][1000 genomes]
rs4902359	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4902360	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4902361	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4902362	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55658675	0.81[EUR][1000 genomes]
rs7146939	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7150646	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7154852	0.81[EUR][1000 genomes]
rs7156617	0.87[EUR][1000 genomes]
rs7159443	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7161394	0.81[EUR][1000 genomes]
rs8005829	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8009396	0.86[EUR][1000 genomes]
rs8009714	0.86[EUR][1000 genomes]
rs8010213	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8181939	0.81[EUR][1000 genomes]
rs884683	0.86[EUR][1000 genomes]
rs942626	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs942627	0.81[EUR][1000 genomes]
rs942628	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs942629	0.83[EUR][1000 genomes]
rs998247	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65570200-65572000	Enhancers	Sigmoid Colon	Sigmoid Colon
2	chr14:65570400-65571600	Weak transcription	Psoas Muscle	Psoas
3	chr14:65570400-65571800	Enhancers	Fetal Intestine Small	intestine
4	chr14:65570400-65572000	Enhancers	Fetal Intestine Large	intestine
5	chr14:65570400-65572000	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr14:65570400-65573800	Weak transcription	Fetal Heart	heart
7	chr14:65570600-65571800	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr14:65570600-65571800	Enhancers	K562	blood
9	chr14:65570600-65572400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr14:65570600-65572800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr14:65570600-65572800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr14:65570600-65573200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr14:65570600-65573400	Weak transcription	GM12878-XiMat	blood
14	chr14:65570600-65574000	Weak transcription	Dnd41	blood
15	chr14:65570600-65574200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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