Variant report

Variant	rs7146939
Chromosome Location	chr14:65583581-65583582
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65583557..65585174-chr14:65692284..65694348,2	MCF-7	breast:
2	chr14:65567460..65569268-chr14:65582296..65583895,2	K562	blood:
3	chr14:65568779..65571634-chr14:65582917..65585589,3	MCF-7	breast:
4	chr14:65583338..65585299-chr14:65708352..65712057,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000125952	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10143198	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10151162	0.88[ASN][1000 genomes]
rs11158577	0.94[EUR][1000 genomes]
rs1124751	0.88[ASN][1000 genomes]
rs1124752	0.88[ASN][1000 genomes]
rs11623603	0.86[EUR][1000 genomes]
rs11626156	0.86[EUR][1000 genomes]
rs1256417	0.83[ASN][1000 genomes]
rs1270074	0.80[ASN][1000 genomes]
rs1271582	0.83[ASN][1000 genomes]
rs1953232	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1957948	0.80[ASN][1000 genomes]
rs1957949	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1998688	0.83[ASN][1000 genomes]
rs2151755	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2763888	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2781373	0.89[ASN][1000 genomes]
rs2781374	0.89[ASN][1000 genomes]
rs2781375	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2898863	0.84[EUR][1000 genomes]
rs34459643	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35002541	0.81[EUR][1000 genomes]
rs35520739	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4902360	0.81[ASN][1000 genomes]
rs4902361	0.81[ASN][1000 genomes]
rs4902362	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4902363	0.86[EUR][1000 genomes]
rs7159443	0.81[ASN][1000 genomes]
rs8005829	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8010213	0.81[ASN][1000 genomes]
rs8018788	0.84[EUR][1000 genomes]
rs868814	0.86[EUR][1000 genomes]
rs942626	0.81[ASN][1000 genomes]
rs942628	0.81[ASN][1000 genomes]
rs942629	0.82[EUR][1000 genomes]
rs998247	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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