Variant report

Variant	rs12433870
Chromosome Location	chr14:65536062-65536063
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65534580..65538429-chr14:65542386..65544897,3	K562	blood:
2	chr14:65535365..65536995-chr14:65539588..65541589,2	K562	blood:
3	chr14:65518455..65520401-chr14:65534665..65537046,2	K562	blood:
4	chr14:65516810..65519484-chr14:65534795..65537184,2	MCF-7	breast:
5	chr14:65506811..65508511-chr14:65534721..65536903,2	K562	blood:

Variant related genes	Relation type
ENSG00000257365	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10143198	0.86[YRI][hapmap]
rs11850984	0.81[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12434868	0.88[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.83[ASN][1000 genomes]
rs17102391	0.84[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.82[ASN][1000 genomes]
rs1957949	0.86[YRI][hapmap]
rs4902356	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60038853	0.81[ASN][1000 genomes]
rs7148144	0.91[GIH][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs8012652	0.91[GIH][hapmap]
rs8020734	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[GIH][hapmap]
rs998247	0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12433870	FNTB	cis	multi-tissue	Pritchard

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65470400-65539600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr14:65471200-65546200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr14:65501800-65543200	Weak transcription	Fetal Brain Male	brain
4	chr14:65508600-65542000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr14:65514800-65536200	Weak transcription	Small Intestine	intestine
6	chr14:65523000-65538200	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr14:65527200-65539200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr14:65527400-65538000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr14:65527400-65539600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr14:65527400-65540400	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr14:65527600-65538000	Strong transcription	Primary B cells from cord blood	blood
12	chr14:65527600-65540800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr14:65527600-65545600	Strong transcription	Primary T cells from cord blood	blood
14	chr14:65527800-65536600	Strong transcription	Stomach Smooth Muscle	stomach
15	chr14:65527800-65537600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr14:65527800-65553600	Strong transcription	Dnd41	blood
17	chr14:65528200-65536200	Weak transcription	Stomach Mucosa	stomach
18	chr14:65528400-65536200	Weak transcription	Fetal Heart	heart
19	chr14:65528800-65555400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr14:65529600-65537200	Weak transcription	Colon Smooth Muscle	Colon
21	chr14:65529600-65537800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr14:65529600-65541600	Weak transcription	NH-A	brain
23	chr14:65529800-65536200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr14:65529800-65537400	Strong transcription	Adipose Nuclei	Adipose
25	chr14:65529800-65543000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr14:65530000-65553000	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr14:65530400-65539000	Weak transcription	HUVEC	blood vessel
28	chr14:65530400-65543200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr14:65531200-65541400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr14:65531400-65536400	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr14:65532400-65537000	Weak transcription	HMEC	breast
32	chr14:65532400-65539200	Weak transcription	K562	blood
33	chr14:65532400-65539600	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr14:65532600-65538200	Weak transcription	Fetal Kidney	kidney
35	chr14:65532600-65540400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr14:65532600-65542400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr14:65532800-65536200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr14:65532800-65537200	Weak transcription	NHDF-Ad	bronchial
39	chr14:65533000-65536200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr14:65533000-65536200	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr14:65533000-65536200	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr14:65533000-65536200	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr14:65533000-65536200	Weak transcription	Brain Anterior Caudate	brain
44	chr14:65533000-65536400	Weak transcription	Osteobl	bone
45	chr14:65533000-65536600	Weak transcription	Brain Hippocampus Middle	brain
46	chr14:65533200-65536200	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr14:65533200-65536200	Weak transcription	Brain Cingulate Gyrus	brain
48	chr14:65533200-65536200	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr14:65533200-65536200	Weak transcription	Colonic Mucosa	Colon
50	chr14:65533200-65536200	Weak transcription	Fetal Lung	lung

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