Variant report

Variant	rs11625132
Chromosome Location	chr14:39356268-39356269
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1547051	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1547052	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1570167	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1957050	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1957054	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1957056	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4399455	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4899126	1.00[CHB][hapmap]
rs57949090	0.83[AFR][1000 genomes]
rs6571877	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6571890	1.00[CHB][hapmap]
rs6571891	1.00[CHB][hapmap]
rs73281360	0.83[AFR][1000 genomes]
rs73281373	0.83[AFR][1000 genomes]
rs73281380	0.83[AFR][1000 genomes]
rs762007	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8006698	0.83[AFR][1000 genomes]
rs8013494	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564416	chr14:39140536-39440106	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv470631	chr14:39153764-39440106	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv3429206	chr14:39160730-39648836	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	nsv932194	chr14:39173578-39411337	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv522416	chr14:39356146-39358776	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39350600-39369600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr14:39355000-39356600	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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