Variant report

Variant	rs11625197
Chromosome Location	chr14:77746112-77746113
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:77741494..77746628-chr14:77751488..77756217,6	MCF-7	breast:
2	chr14:77745441..77747775-chr14:77749161..77750911,2	MCF-7	breast:
3	chr14:77744963..77747141-chr14:77762245..77764781,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000009830	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1600005	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59730492	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv1361	chr14:77707417-77753024	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv902104	chr14:77720741-77756321	Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11625197	GSTZ1	Cis_1M	lymphoblastoid	RTeQTL
rs11625197	GSTZ1	cis	Esophagus Mucosa	GTEx

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77738800-77749600	Weak transcription	NHDF-Ad	bronchial
2	chr14:77739000-77749800	Weak transcription	HUVEC	blood vessel
3	chr14:77739400-77749000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr14:77739600-77775600	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr14:77740000-77749600	Weak transcription	HMEC	breast
6	chr14:77740200-77746400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr14:77740200-77749600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr14:77740200-77750800	Weak transcription	Fetal Thymus	thymus
9	chr14:77740200-77766800	Strong transcription	Cortex derived primary cultured neurospheres	brain
10	chr14:77740200-77769800	Weak transcription	Small Intestine	intestine
11	chr14:77740400-77746200	Weak transcription	NHEK	skin
12	chr14:77740400-77749200	Weak transcription	Osteobl	bone
13	chr14:77740400-77766000	Weak transcription	Stomach Mucosa	stomach
14	chr14:77740800-77758000	Strong transcription	Fetal Stomach	stomach
15	chr14:77740800-77766200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr14:77741000-77749600	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr14:77741000-77750000	Weak transcription	Primary B cells from peripheral blood	blood
18	chr14:77741000-77750400	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr14:77741000-77767400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr14:77741200-77749400	Weak transcription	Primary hematopoietic stem cells	blood
21	chr14:77741400-77753600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr14:77741800-77746600	Strong transcription	Brain Germinal Matrix	brain
23	chr14:77741800-77749000	Strong transcription	Fetal Intestine Small	intestine
24	chr14:77741800-77749400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr14:77741800-77752000	Weak transcription	Psoas Muscle	Psoas
26	chr14:77741800-77755400	Strong transcription	Fetal Muscle Leg	muscle
27	chr14:77741800-77757200	Strong transcription	Liver	Liver
28	chr14:77741800-77758600	Strong transcription	Fetal Muscle Trunk	muscle
29	chr14:77741800-77773600	Weak transcription	GM12878-XiMat	blood
30	chr14:77742000-77747800	Weak transcription	HSMM	muscle
31	chr14:77742000-77749200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr14:77742000-77749400	Weak transcription	NH-A	brain
33	chr14:77742000-77756800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr14:77742000-77757400	Weak transcription	Right Atrium	heart
35	chr14:77742000-77766600	Strong transcription	Placenta	Placenta
36	chr14:77742200-77748400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr14:77742200-77755000	Strong transcription	Lung	lung
38	chr14:77742200-77757600	Strong transcription	Ovary	ovary
39	chr14:77742200-77767600	Strong transcription	Stomach Smooth Muscle	stomach
40	chr14:77742400-77747000	Strong transcription	Right Ventricle	heart
41	chr14:77742400-77747000	Strong transcription	Spleen	Spleen
42	chr14:77742400-77752200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr14:77742400-77753000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr14:77742400-77755000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr14:77742400-77755200	Strong transcription	Brain Cingulate Gyrus	brain
46	chr14:77742400-77766400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr14:77742400-77766400	Strong transcription	Adipose Nuclei	Adipose
48	chr14:77742400-77780200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr14:77742600-77747000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr14:77742600-77747000	Strong transcription	Fetal Intestine Large	intestine

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