Variant report

Variant	rs1600005
Chromosome Location	chr14:77736274-77736275
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:77656618..77658691-chr14:77734209..77736747,2	MCF-7	breast:
2	chr14:77734678..77737344-chr14:77778616..77780685,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000009830	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11159254	0.89[ASN][1000 genomes]
rs11547794	0.89[ASN][1000 genomes]
rs11624564	0.89[ASN][1000 genomes]
rs11625197	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4903565	0.89[ASN][1000 genomes]
rs59730492	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61990261	0.91[ASN][1000 genomes]
rs7158951	0.89[ASN][1000 genomes]
rs7159558	0.89[ASN][1000 genomes]
rs8009261	0.89[ASN][1000 genomes]
rs8009733	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv1361	chr14:77707417-77753024	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv902104	chr14:77720741-77756321	Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
4	esv3373764	chr14:77735746-77736439	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1600005	GSTZ1	cis	Esophagus Mucosa	GTEx
rs1600005	GSTZ1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77735400-77736400	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:77735400-77736400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr14:77735400-77736600	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:77735400-77737400	Enhancers	Dnd41	blood
5	chr14:77735600-77736600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr14:77735600-77736800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr14:77735600-77737200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
8	chr14:77735600-77738000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
9	chr14:77735600-77738000	Enhancers	Pancreas	Pancrea
10	chr14:77735800-77736400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr14:77735800-77737000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr14:77735800-77737000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr14:77736000-77736400	Bivalent/Poised TSS	Primary B cells from cord blood	blood
14	chr14:77736000-77736400	Bivalent/Poised TSS	Primary T cells from cord blood	blood
15	chr14:77736000-77736400	Bivalent/Poised TSS	GM12878-XiMat	blood
16	chr14:77736000-77736400	Flanking Bivalent TSS/Enh	NHEK	skin
17	chr14:77736000-77737800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
18	chr14:77736000-77738000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
19	chr14:77736200-77736400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
20	chr14:77736200-77736400	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr14:77736200-77736400	Flanking Active TSS	Primary hematopoietic stem cells	blood
22	chr14:77736200-77736400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
23	chr14:77736200-77736400	Flanking Bivalent TSS/Enh	Pancreatic Islets	Pancreatic Islet
24	chr14:77736200-77736400	Bivalent/Poised TSS	Hela-S3	cervix
25	chr14:77736200-77736400	Flanking Bivalent TSS/Enh	HMEC	breast
26	chr14:77736200-77736400	Flanking Bivalent TSS/Enh	HSMM	muscle
27	chr14:77736200-77736400	Flanking Bivalent TSS/Enh	HSMMtube	muscle
28	chr14:77736200-77736400	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
29	chr14:77736200-77736400	Flanking Bivalent TSS/Enh	K562	blood
30	chr14:77736200-77736400	Flanking Bivalent TSS/Enh	NH-A	brain
31	chr14:77736200-77736400	Flanking Bivalent TSS/Enh	NHDF-Ad	bronchial
32	chr14:77736200-77736400	Flanking Bivalent TSS/Enh	NHLF	lung
33	chr14:77736200-77736400	Flanking Bivalent TSS/Enh	Osteobl	bone
34	chr14:77736200-77736600	Bivalent Enhancer	HepG2	liver
35	chr14:77736200-77737000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr14:77736200-77737800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell

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