Variant report

Variant	rs4903565
Chromosome Location	chr14:77737088-77737089
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:77734678..77737344-chr14:77778616..77780685,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000009830	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11159254	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11547794	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11624564	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1600005	0.89[ASN][1000 genomes]
rs2216089	0.86[ASN][1000 genomes]
rs59730492	0.83[ASN][1000 genomes]
rs61990261	0.85[ASN][1000 genomes]
rs7158951	1.00[ASN][1000 genomes]
rs7159558	1.00[ASN][1000 genomes]
rs8009261	1.00[ASN][1000 genomes]
rs8009733	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv1361	chr14:77707417-77753024	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv902104	chr14:77720741-77756321	Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77735400-77737400	Enhancers	Dnd41	blood
2	chr14:77735600-77737200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
3	chr14:77735600-77738000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
4	chr14:77735600-77738000	Enhancers	Pancreas	Pancrea
5	chr14:77736000-77737800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
6	chr14:77736000-77738000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr14:77736200-77737800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
8	chr14:77736400-77737200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr14:77736400-77737200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr14:77736400-77737400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
11	chr14:77736400-77738000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
12	chr14:77736400-77738000	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr14:77736600-77737200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr14:77736600-77737600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
15	chr14:77736600-77737600	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
16	chr14:77736600-77737800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
17	chr14:77736600-77737800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr14:77736600-77737800	Bivalent Enhancer	Fetal Brain Male	brain
19	chr14:77736600-77738000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr14:77736800-77737200	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr14:77736800-77737200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
22	chr14:77736800-77737200	Flanking Bivalent TSS/Enh	Brain Dorsolateral Prefrontal Cortex	brain
23	chr14:77736800-77737200	Bivalent Enhancer	Esophagus	oesophagus
24	chr14:77736800-77737400	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
25	chr14:77736800-77737600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
26	chr14:77736800-77737600	Flanking Active TSS	Primary hematopoietic stem cells	blood
27	chr14:77736800-77737600	Bivalent/Poised TSS	Fetal Brain Female	brain
28	chr14:77736800-77737800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
29	chr14:77736800-77737800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr14:77736800-77737800	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
31	chr14:77736800-77738000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr14:77737000-77737200	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr14:77737000-77737200	Bivalent Enhancer	Brain Hippocampus Middle	brain
34	chr14:77737000-77737200	Bivalent Enhancer	Lung	lung
35	chr14:77737000-77737200	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
36	chr14:77737000-77737400	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr14:77737000-77737400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr14:77737000-77737400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
39	chr14:77737000-77737400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr14:77737000-77737400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr14:77737000-77737400	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
42	chr14:77737000-77737400	Bivalent Enhancer	HMEC	breast
43	chr14:77737000-77737600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
44	chr14:77737000-77737800	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr14:77737000-77737800	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr14:77737000-77737800	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
47	chr14:77737000-77738000	Enhancers	Primary B cells from cord blood	blood
48	chr14:77737000-77738000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr14:77737000-77738000	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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