Variant report

Variant	rs11626911
Chromosome Location	chr14:64364350-64364351
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64319630..64322805-chr14:64362843..64364773,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000054654	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1000904	0.82[EUR][1000 genomes]
rs11158515	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11158518	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11628650	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12161903	0.91[ASN][1000 genomes]
rs12431956	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12432760	0.91[ASN][1000 genomes]
rs12435958	0.82[CHB][hapmap]
rs12586461	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12590842	0.94[ASN][1000 genomes]
rs12893838	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17750888	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17750906	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1958413	0.85[JPT][hapmap]
rs2357001	0.82[CHB][hapmap]
rs4899121	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4902253	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56376318	0.94[ASN][1000 genomes]
rs60305436	0.94[ASN][1000 genomes]
rs61985726	0.82[ASN][1000 genomes]
rs61985748	0.88[ASN][1000 genomes]
rs6573535	0.83[CHB][hapmap]
rs66460676	0.91[ASN][1000 genomes]
rs66764453	0.91[ASN][1000 genomes]
rs67011590	0.96[ASN][1000 genomes]
rs67106029	0.88[ASN][1000 genomes]
rs67975797	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7140278	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7143794	0.96[ASN][1000 genomes]
rs7145302	0.81[CHB][hapmap]
rs7145736	0.88[ASN][1000 genomes]
rs7146469	0.88[ASN][1000 genomes]
rs7149405	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73276854	0.91[ASN][1000 genomes]
rs8008800	0.87[ASN][1000 genomes]
rs8010312	0.81[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs8010385	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8013611	0.87[CHB][hapmap];0.92[ASN][1000 genomes]
rs8016321	0.94[ASN][1000 genomes]
rs8017009	0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs945031	0.80[EUR][1000 genomes]
rs951249	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs951250	0.83[CHB][hapmap]
rs998242	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1038825	chr14:64109441-64491720	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1037140	chr14:64248421-64442980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv542119	chr14:64248421-64442980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv564904	chr14:64346190-64416898	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv1793389	chr14:64346190-64457224	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv826965	chr14:64360774-64366612	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64337000-64365200	Weak transcription	Fetal Thymus	thymus
2	chr14:64337800-64403800	Weak transcription	Thymus	Thymus
3	chr14:64339400-64366800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr14:64341400-64366800	Weak transcription	Primary T cells from cord blood	blood
5	chr14:64342800-64368400	Weak transcription	Esophagus	oesophagus
6	chr14:64349400-64366600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr14:64349600-64366000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr14:64352800-64366800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr14:64357800-64364800	Weak transcription	Fetal Intestine Large	intestine
10	chr14:64357800-64366600	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr14:64358000-64364400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr14:64358200-64375800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr14:64358200-64377600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr14:64358400-64365400	Enhancers	Adipose Nuclei	Adipose
15	chr14:64358400-64366000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr14:64358600-64364400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr14:64358600-64365800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr14:64358800-64377600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr14:64359000-64366400	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr14:64359000-64367800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr14:64360000-64365000	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr14:64360600-64365600	Enhancers	Fetal Lung	lung
23	chr14:64360600-64382200	Weak transcription	Psoas Muscle	Psoas
24	chr14:64360800-64364400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr14:64360800-64367000	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr14:64360800-64374200	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr14:64360800-64377800	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr14:64361200-64373600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr14:64361400-64369800	Weak transcription	Colonic Mucosa	Colon
30	chr14:64362600-64365000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr14:64362600-64365000	Enhancers	NH-A	brain
32	chr14:64362600-64365400	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr14:64362600-64365400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr14:64362600-64365600	Enhancers	Stomach Mucosa	stomach
35	chr14:64362800-64364600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr14:64362800-64364800	Enhancers	Placenta	Placenta
37	chr14:64362800-64365000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr14:64362800-64365000	Enhancers	Fetal Kidney	kidney
39	chr14:64362800-64365200	Enhancers	Fetal Heart	heart
40	chr14:64362800-64365200	Enhancers	NHDF-Ad	bronchial
41	chr14:64362800-64365200	Enhancers	NHLF	lung
42	chr14:64362800-64365200	Enhancers	Osteobl	bone
43	chr14:64363000-64364400	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr14:64363000-64364400	Enhancers	Pancreas	Pancrea
45	chr14:64363000-64365000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr14:64363000-64365000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr14:64363000-64365000	Enhancers	Ovary	ovary
48	chr14:64363000-64365000	Enhancers	HSMMtube	muscle
49	chr14:64363000-64365400	Enhancers	Fetal Muscle Leg	muscle
50	chr14:64363000-64365400	Enhancers	Lung	lung

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