Variant report

Variant	rs8017009
Chromosome Location	chr14:64335301-64335302
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64319633..64321409-chr14:64334097..64335683,2	MCF-7	breast:
2	chr14:64318570..64321307-chr14:64334480..64337114,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000054654	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11158515	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11158518	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11626911	0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11628650	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12161903	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12431956	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12432760	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12435958	0.87[CHB][hapmap]
rs12586461	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12590842	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17750888	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17750906	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1958413	0.81[JPT][hapmap]
rs2357001	0.87[CHB][hapmap]
rs34486661	0.80[ASN][1000 genomes]
rs4899121	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4902249	0.80[ASN][1000 genomes]
rs4902253	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56376318	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56401218	0.81[ASN][1000 genomes]
rs60305436	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61985718	0.80[ASN][1000 genomes]
rs61985726	0.88[ASN][1000 genomes]
rs61985748	0.94[ASN][1000 genomes]
rs6573535	0.87[CHB][hapmap]
rs66460676	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66764453	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67011590	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67106029	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67975797	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7140278	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7143794	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7145302	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs7145736	0.94[ASN][1000 genomes]
rs7146469	0.94[ASN][1000 genomes]
rs7149405	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7149609	0.80[ASN][1000 genomes]
rs73276854	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8008800	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8010312	0.95[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs8010385	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8013611	0.91[CHB][hapmap];0.83[JPT][hapmap];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8015374	0.80[ASN][1000 genomes]
rs8016321	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs951249	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs951250	0.87[CHB][hapmap];0.80[ASN][1000 genomes]
rs998242	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1038825	chr14:64109441-64491720	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1037140	chr14:64248421-64442980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv542119	chr14:64248421-64442980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64321200-64340600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr14:64321400-64350200	Weak transcription	Fetal Stomach	stomach
3	chr14:64322800-64340400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr14:64322800-64340600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:64323200-64340200	Weak transcription	Left Ventricle	heart
6	chr14:64323200-64340400	Weak transcription	Spleen	Spleen
7	chr14:64324600-64341400	Weak transcription	HSMM	muscle
8	chr14:64327200-64340600	Weak transcription	Right Ventricle	heart
9	chr14:64327400-64355200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr14:64327600-64360000	Weak transcription	Gastric	stomach
11	chr14:64327800-64342200	Weak transcription	Esophagus	oesophagus
12	chr14:64330200-64343600	Weak transcription	Brain Germinal Matrix	brain
13	chr14:64330600-64338200	Enhancers	Primary B cells from peripheral blood	blood
14	chr14:64331200-64336600	Weak transcription	HMEC	breast
15	chr14:64331200-64356400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr14:64331400-64339800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr14:64331400-64340400	Weak transcription	Fetal Heart	heart
18	chr14:64331400-64340800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr14:64331400-64342200	Weak transcription	NHLF	lung
20	chr14:64331600-64335400	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr14:64331600-64335400	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr14:64331600-64335600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr14:64331600-64336400	Enhancers	Dnd41	blood
24	chr14:64331600-64336600	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr14:64331600-64336600	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr14:64331600-64336600	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr14:64331600-64336600	Weak transcription	HUVEC	blood vessel
28	chr14:64331600-64336800	Weak transcription	Osteobl	bone
29	chr14:64331600-64340400	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr14:64331600-64340400	Weak transcription	Right Atrium	heart
31	chr14:64331600-64340800	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr14:64331600-64341000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr14:64331600-64341800	Weak transcription	NHDF-Ad	bronchial
34	chr14:64331800-64341400	Enhancers	Primary T cells fromperipheralblood	blood
35	chr14:64332200-64336400	Weak transcription	Hela-S3	cervix
36	chr14:64332200-64336600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
37	chr14:64332200-64336600	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr14:64332400-64338000	Enhancers	Primary B cells from cord blood	blood
39	chr14:64332600-64337200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
40	chr14:64333000-64341000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr14:64333200-64340400	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr14:64333200-64340400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr14:64333400-64340400	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr14:64333400-64340600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr14:64334000-64335600	Weak transcription	Primary T cells from cord blood	blood
46	chr14:64334200-64335800	Enhancers	Stomach Mucosa	stomach
47	chr14:64334400-64335600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr14:64334400-64336000	Enhancers	Fetal Intestine Large	intestine
49	chr14:64334400-64336000	Flanking Active TSS	GM12878-XiMat	blood
50	chr14:64334400-64337000	Enhancers	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links