Variant report

Variant	rs11627255
Chromosome Location	chr14:56182856-56182857
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:56178438..56180249-chr14:56182200..56183742,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10498477	0.80[JPT][hapmap]
rs10873090	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11158049	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11621130	0.86[CEU][hapmap];0.80[JPT][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12431962	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12432001	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12432019	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12587803	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2880396	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6573055	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7152314	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8015301	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832804	chr14:56083850-56277632	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv901966	chr14:56160904-56436203	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56102400-56185400	Weak transcription	Right Ventricle	heart
2	chr14:56154000-56191000	Weak transcription	Aorta	Aorta
3	chr14:56178200-56183400	Weak transcription	Left Ventricle	heart
4	chr14:56179800-56188800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr14:56179800-56189000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr14:56180000-56183200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr14:56180800-56183200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr14:56182200-56183000	Enhancers	NHDF-Ad	bronchial
9	chr14:56182200-56183400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr14:56182200-56183400	Enhancers	HSMM	muscle
11	chr14:56182200-56183400	Enhancers	HSMMtube	muscle
12	chr14:56182200-56183400	Enhancers	NH-A	brain
13	chr14:56182200-56184000	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr14:56182400-56183000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr14:56182400-56183000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr14:56182400-56183000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr14:56182400-56183400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr14:56182400-56183400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr14:56182400-56183400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr14:56182400-56183400	Enhancers	Muscle Satellite Cultured Cells	--
21	chr14:56182400-56183400	Enhancers	Adipose Nuclei	Adipose
22	chr14:56182400-56183400	Enhancers	Placenta	Placenta
23	chr14:56182400-56183400	Enhancers	GM12878-XiMat	blood
24	chr14:56182400-56183400	Bivalent Enhancer	HMEC	breast
25	chr14:56182400-56183400	Enhancers	NHLF	lung
26	chr14:56182400-56183600	Enhancers	Osteobl	bone
27	chr14:56182600-56183000	Enhancers	Placenta Amnion	Placenta Amnion
28	chr14:56182600-56183200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr14:56182600-56183400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr14:56182600-56183600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr14:56182800-56183200	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links