Variant report

Variant	rs8015301
Chromosome Location	chr14:56176458-56176459
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:56172874..56174577-chr14:56174772..56176710,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10130783	0.90[ASN][1000 genomes]
rs10498477	0.84[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10873090	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11158049	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11621130	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11627255	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12431962	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12432001	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12432019	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12587803	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2342585	0.90[ASN][1000 genomes]
rs2342586	0.91[ASN][1000 genomes]
rs2880396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573055	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7147303	0.95[ASN][1000 genomes]
rs7152314	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8021103	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832804	chr14:56083850-56277632	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv901966	chr14:56160904-56436203	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56102400-56185400	Weak transcription	Right Ventricle	heart
2	chr14:56154000-56177800	Weak transcription	Left Ventricle	heart
3	chr14:56154000-56191000	Weak transcription	Aorta	Aorta
4	chr14:56154400-56177800	Weak transcription	Fetal Muscle Leg	muscle
5	chr14:56157600-56178000	Weak transcription	Psoas Muscle	Psoas
6	chr14:56157600-56180000	Weak transcription	Primary B cells from cord blood	blood
7	chr14:56164600-56179600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr14:56169000-56177400	Weak transcription	Osteobl	bone
9	chr14:56169600-56182400	Weak transcription	GM12878-XiMat	blood
10	chr14:56170000-56182400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr14:56170400-56182400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr14:56170800-56177800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr14:56172200-56182200	Weak transcription	HSMM	muscle
14	chr14:56172600-56182200	Weak transcription	HSMMtube	muscle
15	chr14:56174000-56177400	Weak transcription	Right Atrium	heart
16	chr14:56174200-56177400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr14:56174200-56182400	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr14:56174400-56177000	Weak transcription	NHDF-Ad	bronchial
19	chr14:56174600-56177000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr14:56174600-56177200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr14:56174600-56178000	Weak transcription	NHLF	lung
22	chr14:56174600-56179000	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr14:56174600-56179200	Weak transcription	Brain Cingulate Gyrus	brain
24	chr14:56174600-56179200	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr14:56174600-56179600	Weak transcription	Brain Anterior Caudate	brain
26	chr14:56174600-56182400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr14:56174800-56177200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr14:56174800-56179200	Weak transcription	Brain Substantia Nigra	brain
29	chr14:56175600-56179000	Weak transcription	Skeletal Muscle Male	skeletal muscle

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