Variant report

Variant	rs11627455
Chromosome Location	chr14:97380598-97380599
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:97378925..97381574-chr14:97382835..97384827,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10145383	1.00[CHB][hapmap]
rs10146571	1.00[CHB][hapmap]
rs11160369	0.82[CHB][hapmap]
rs11160377	1.00[ASN][1000 genomes]
rs11628733	0.82[CHB][hapmap]
rs12101203	0.92[ASN][1000 genomes]
rs12433112	0.90[CHB][hapmap]
rs12434466	0.80[CHB][hapmap]
rs12586511	0.92[ASN][1000 genomes]
rs12589919	0.90[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12590169	0.92[ASN][1000 genomes]
rs12878184	0.90[CHB][hapmap]
rs12881995	0.87[ASN][1000 genomes]
rs12882038	0.93[ASN][1000 genomes]
rs12882853	1.00[CHB][hapmap]
rs12887093	0.87[ASN][1000 genomes]
rs12889255	0.92[ASN][1000 genomes]
rs12892609	0.92[ASN][1000 genomes]
rs12893513	0.93[ASN][1000 genomes]
rs12893711	0.93[ASN][1000 genomes]
rs12894533	0.87[ASN][1000 genomes]
rs12894621	0.90[CHB][hapmap]
rs12897588	0.90[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17191471	1.00[JPT][hapmap]
rs2145635	0.92[ASN][1000 genomes]
rs2145636	0.90[CHB][hapmap]
rs2180897	0.92[ASN][1000 genomes]
rs2224442	0.82[CHB][hapmap]
rs2224443	0.95[ASN][1000 genomes]
rs2230532	0.90[CHB][hapmap]
rs4270096	0.90[CHB][hapmap]
rs4900346	0.90[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4900348	0.89[ASN][1000 genomes]
rs4900350	0.90[CHB][hapmap];0.85[ASN][1000 genomes]
rs4900351	1.00[CHB][hapmap]
rs4900352	0.93[ASN][1000 genomes]
rs4900353	1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4905548	0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4905549	0.92[ASN][1000 genomes]
rs4905550	0.92[ASN][1000 genomes]
rs4905551	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4905558	0.90[CHB][hapmap]
rs4905561	0.95[ASN][1000 genomes]
rs4905562	0.82[ASN][1000 genomes]
rs4905563	0.82[ASN][1000 genomes]
rs4905567	1.00[ASN][1000 genomes]
rs7156355	0.90[CHB][hapmap]
rs7158545	0.87[ASN][1000 genomes]
rs723810	0.90[CHB][hapmap]
rs736929	1.00[CHB][hapmap]
rs749279	1.00[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.90[MKK][hapmap];1.00[ASN][1000 genomes]
rs764300	0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs8013081	0.90[CHB][hapmap]
rs8022152	1.00[ASN][1000 genomes]
rs9323955	0.90[CHB][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv948620	chr14:97334444-98133191	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv832867	chr14:97365919-97541763	Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs11627455	VRK1	cis	parietal	SCAN
rs11627455	CLMN	cis	parietal	SCAN
rs11627455	VRK1	cis	cerebellum	SCAN
rs11627455	TCL1A	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97368600-97391400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:97376800-97387600	Weak transcription	Thymus	Thymus
3	chr14:97377600-97380600	Weak transcription	Dnd41	blood
4	chr14:97378400-97383000	Weak transcription	K562	blood
5	chr14:97379000-97380600	Weak transcription	Spleen	Spleen
6	chr14:97379000-97387800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr14:97379400-97380800	Enhancers	Fetal Muscle Leg	muscle
8	chr14:97379400-97411800	Weak transcription	Primary T cells from cord blood	blood
9	chr14:97379800-97383000	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr14:97380200-97381400	Enhancers	Fetal Brain Female	brain
11	chr14:97380200-97381400	Enhancers	Fetal Heart	heart
12	chr14:97380400-97380600	Enhancers	Fetal Muscle Trunk	muscle
13	chr14:97380400-97381200	Enhancers	Fetal Brain Male	brain

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