Variant report

Variant	rs12881995
Chromosome Location	chr14:97360255-97360256
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:97352755..97357017-chr14:97358100..97363870,8	K562	blood:
2	chr14:97352755..97355141-chr14:97359581..97361820,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10145383	1.00[CHB][hapmap]
rs10146571	1.00[CHB][hapmap]
rs11160369	0.82[CHB][hapmap]
rs11160377	0.87[ASN][1000 genomes]
rs11627455	0.87[ASN][1000 genomes]
rs11628733	0.82[CHB][hapmap]
rs12101203	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12433112	0.91[CHB][hapmap]
rs12434466	0.80[CHB][hapmap]
rs12586511	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12589919	0.90[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12590169	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12878184	0.90[CHB][hapmap]
rs12882038	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12882853	1.00[CHB][hapmap]
rs12887093	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12889255	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12892609	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12893513	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12893711	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12894533	0.84[ASN][1000 genomes]
rs12894621	0.91[CHB][hapmap]
rs12897588	0.90[CHB][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17191471	0.84[JPT][hapmap]
rs2145635	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2145636	0.90[CHB][hapmap]
rs2180897	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2224442	0.82[CHB][hapmap]
rs2224443	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2230532	0.90[CHB][hapmap]
rs4270096	0.91[CHB][hapmap]
rs4900346	0.90[CHB][hapmap];0.89[JPT][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4900348	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4900350	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs4900351	1.00[CHB][hapmap]
rs4900352	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4900353	1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4905548	0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4905549	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4905550	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4905551	1.00[CHB][hapmap];0.84[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4905558	0.90[CHB][hapmap]
rs4905561	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4905562	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4905563	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4905567	0.87[ASN][1000 genomes]
rs7156355	0.90[CHB][hapmap]
rs723810	0.90[CHB][hapmap]
rs736929	1.00[CHB][hapmap]
rs749279	1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs764300	0.91[CHB][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8013081	0.91[CHB][hapmap]
rs8022152	0.87[ASN][1000 genomes]
rs9323955	0.90[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv948620	chr14:97334444-98133191	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97294000-97362600	Weak transcription	Spleen	Spleen
2	chr14:97303400-97371600	Weak transcription	Ovary	ovary
3	chr14:97325600-97362000	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr14:97331000-97378400	Weak transcription	A549	lung
5	chr14:97342800-97367000	Weak transcription	NHEK	skin
6	chr14:97347000-97368200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr14:97348200-97361400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr14:97349200-97367200	Weak transcription	Primary B cells from cord blood	blood
9	chr14:97349200-97367600	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr14:97349200-97377400	Weak transcription	Primary T cells from cord blood	blood
11	chr14:97349400-97369200	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr14:97355200-97363200	Weak transcription	K562	blood
13	chr14:97355400-97360400	Weak transcription	GM12878-XiMat	blood
14	chr14:97355400-97361000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr14:97356000-97361800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr14:97356000-97376600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr14:97357600-97362000	Weak transcription	Thymus	Thymus
18	chr14:97360200-97361800	Strong transcription	Dnd41	blood

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