Variant report

Variant	rs11628166
Chromosome Location	chr14:78641585-78641586
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11628271	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12878262	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12885580	0.88[AFR][1000 genomes]
rs12896828	1.00[YRI][hapmap]
rs12897003	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12897190	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17107053	0.92[EUR][1000 genomes]
rs17754667	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1882818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2049818	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61975962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1366	chr14:78633044-78677718	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1038627	chr14:78635498-78657912	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78636200-78641800	Active TSS	Fetal Brain Female	brain
2	chr14:78639600-78644600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr14:78640200-78642200	Flanking Active TSS	Brain Germinal Matrix	brain
4	chr14:78640800-78644400	Weak transcription	Brain Anterior Caudate	brain
5	chr14:78641000-78641800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr14:78641000-78647800	Weak transcription	Fetal Brain Male	brain
7	chr14:78641200-78644400	Weak transcription	Brain Angular Gyrus	brain
8	chr14:78641400-78644600	Weak transcription	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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