Variant report

Variant	rs17107053
Chromosome Location	chr14:78643413-78643414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10131942	0.81[AFR][1000 genomes]
rs10148473	0.82[JPT][hapmap]
rs11628166	0.92[EUR][1000 genomes]
rs11628271	0.92[EUR][1000 genomes]
rs12878262	0.92[EUR][1000 genomes]
rs12897003	0.92[EUR][1000 genomes]
rs12897190	0.92[EUR][1000 genomes]
rs17754667	0.83[EUR][1000 genomes]
rs1882818	0.92[EUR][1000 genomes]
rs2049818	0.92[EUR][1000 genomes]
rs28622289	0.84[AFR][1000 genomes]
rs61975962	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1366	chr14:78633044-78677718	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1038627	chr14:78635498-78657912	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78639600-78644600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr14:78640800-78644400	Weak transcription	Brain Anterior Caudate	brain
3	chr14:78641000-78647800	Weak transcription	Fetal Brain Male	brain
4	chr14:78641200-78644400	Weak transcription	Brain Angular Gyrus	brain
5	chr14:78641400-78644600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr14:78643000-78643600	Flanking Active TSS	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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