Variant report

Variant	rs28622289
Chromosome Location	chr14:78645792-78645793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10129486	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10131942	0.95[AFR][1000 genomes]
rs10137760	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10145155	1.00[ASN][1000 genomes]
rs10148473	0.88[AFR][1000 genomes]
rs17107053	0.84[AFR][1000 genomes]
rs28610490	1.00[ASN][1000 genomes]
rs56948116	1.00[ASN][1000 genomes]
rs57816474	1.00[ASN][1000 genomes]
rs7149326	1.00[ASN][1000 genomes]
rs73322235	1.00[ASN][1000 genomes]
rs73322257	1.00[ASN][1000 genomes]
rs73322263	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1366	chr14:78633044-78677718	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1038627	chr14:78635498-78657912	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78641000-78647800	Weak transcription	Fetal Brain Male	brain
2	chr14:78643600-78646000	Enhancers	Brain Germinal Matrix	brain
3	chr14:78645000-78645800	Enhancers	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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