Variant report

Variant	rs56948116
Chromosome Location	chr14:78667408-78667409
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10129486	1.00[ASN][1000 genomes]
rs10137760	1.00[ASN][1000 genomes]
rs10145155	1.00[ASN][1000 genomes]
rs17107231	1.00[EUR][1000 genomes]
rs28542174	1.00[EUR][1000 genomes]
rs28610490	1.00[ASN][1000 genomes]
rs28622289	1.00[ASN][1000 genomes]
rs28731105	1.00[EUR][1000 genomes]
rs57816474	1.00[ASN][1000 genomes]
rs58976851	1.00[EUR][1000 genomes]
rs59454468	1.00[EUR][1000 genomes]
rs61600457	1.00[EUR][1000 genomes]
rs7141131	1.00[EUR][1000 genomes]
rs7147253	1.00[EUR][1000 genomes]
rs7149326	1.00[ASN][1000 genomes]
rs73308540	1.00[EUR][1000 genomes]
rs73308556	1.00[EUR][1000 genomes]
rs73308581	1.00[EUR][1000 genomes]
rs73314660	1.00[EUR][1000 genomes]
rs73322235	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73322254	1.00[EUR][1000 genomes]
rs73322257	1.00[ASN][1000 genomes]
rs73322263	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1366	chr14:78633044-78677718	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78662800-78667800	Weak transcription	Brain Angular Gyrus	brain
2	chr14:78665000-78678000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:78665400-78670000	Enhancers	Fetal Thymus	thymus
4	chr14:78665800-78667800	Enhancers	Brain Germinal Matrix	brain
5	chr14:78666000-78670200	Enhancers	Thymus	Thymus
6	chr14:78666600-78668400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr14:78666800-78667800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr14:78666800-78669000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr14:78666800-78669200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr14:78667200-78668000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
11	chr14:78667200-78668200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr14:78667200-78670200	Enhancers	Primary hematopoietic stem cells	blood
13	chr14:78667400-78670200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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