Variant report
| Variant | rs11628304 |
|---|---|
| Chromosome Location | chr14:55384004-55384005 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000131979 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10136972 | 0.82[AMR][1000 genomes] |
| rs10137071 | 0.82[AMR][1000 genomes] |
| rs1107960 | 0.89[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11846809 | 0.83[ASN][1000 genomes] |
| rs28481699 | 0.87[AMR][1000 genomes] |
| rs3759665 | 0.82[AMR][1000 genomes] |
| rs3783643 | 0.86[AMR][1000 genomes] |
| rs3783644 | 0.86[AMR][1000 genomes] |
| rs56164809 | 0.88[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6572993 | 0.87[AMR][1000 genomes] |
| rs6572994 | 0.85[AMR][1000 genomes] |
| rs7146285 | 0.87[AMR][1000 genomes] |
| rs7157085 | 0.83[AMR][1000 genomes] |
| rs7159933 | 0.84[AMR][1000 genomes] |
| rs72715573 | 0.81[AMR][1000 genomes] |
| rs8005471 | 0.83[AMR][1000 genomes] |
| rs8012152 | 0.88[AMR][1000 genomes] |
| rs8013521 | 0.81[AMR][1000 genomes] |
| rs8018800 | 0.82[AMR][1000 genomes] |
| rs8019220 | 0.83[AMR][1000 genomes] |
| rs9285583 | 0.84[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530042 | chr14:55208170-55386966 | Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| 2 | nsv932970 | chr14:55326559-55532749 | Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 49 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:55370600-55388600 | Weak transcription | HepG2 | liver |
