Variant report

Variant	rs3759665
Chromosome Location	chr14:55371605-55371606
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55030801..55036234-chr14:55366700..55372024,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000020577	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10136972	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10137071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10140164	0.87[ASN][1000 genomes]
rs10149103	0.86[ASN][1000 genomes]
rs10150110	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1107960	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11158026	0.84[EUR][1000 genomes]
rs11158028	0.86[ASN][1000 genomes]
rs11621165	0.86[ASN][1000 genomes]
rs11621177	0.86[ASN][1000 genomes]
rs11626396	0.86[ASN][1000 genomes]
rs11628304	0.82[AMR][1000 genomes]
rs11846809	0.91[ASN][1000 genomes]
rs11852045	0.84[ASN][1000 genomes]
rs12147796	0.86[ASN][1000 genomes]
rs17832269	0.80[ASN][1000 genomes]
rs2149482	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2183085	0.81[EUR][1000 genomes]
rs2840268	0.81[EUR][1000 genomes]
rs28481699	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3759664	0.82[ASN][1000 genomes]
rs3783640	0.82[EUR][1000 genomes]
rs3783642	0.94[AFR][1000 genomes]
rs3783643	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3783644	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56164809	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56206440	0.82[EUR][1000 genomes]
rs60258834	0.82[ASN][1000 genomes]
rs61224609	0.88[ASN][1000 genomes]
rs6572993	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6572994	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7146285	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7147286	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7152033	0.89[ASN][1000 genomes]
rs7157085	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7159933	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72715573	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73280573	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8005471	0.82[AMR][1000 genomes]
rs8006363	0.84[ASN][1000 genomes]
rs8007267	0.86[ASN][1000 genomes]
rs8008858	0.85[ASN][1000 genomes]
rs8009997	0.80[ASN][1000 genomes]
rs8011446	0.80[ASN][1000 genomes]
rs8012152	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8013521	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8018688	0.82[ASN][1000 genomes]
rs8018800	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8019220	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8019390	0.86[ASN][1000 genomes]
rs8019824	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8021303	0.82[ASN][1000 genomes]
rs8022453	0.84[ASN][1000 genomes]
rs8023187	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9285583	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9805952	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530042	chr14:55208170-55386966	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv932970	chr14:55326559-55532749	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	esv3358123	chr14:55359251-55378030	Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55370000-55373600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:55370200-55372800	Weak transcription	GM12878-XiMat	blood
3	chr14:55370200-55374600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr14:55370200-55374800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr14:55370200-55376800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr14:55370400-55374400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr14:55370400-55374600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr14:55370400-55374600	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr14:55370400-55374600	Weak transcription	Dnd41	blood
10	chr14:55370400-55374800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr14:55370400-55374800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr14:55370600-55374600	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr14:55370600-55388600	Weak transcription	HepG2	liver
14	chr14:55371600-55372200	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr14:55371600-55372200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr14:55371600-55372200	Enhancers	Monocytes-CD14+_RO01746	blood

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