Variant report

Variant	rs8007267
Chromosome Location	chr14:55378991-55378992
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55368257..55371585-chr14:55378577..55382650,5	MCF-7	breast:
2	chr14:55368884..55370966-chr14:55378226..55380092,2	K562	blood:
3	chr14:55368284..55370170-chr14:55376140..55380944,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131979	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10136972	0.86[ASN][1000 genomes]
rs10137071	0.86[ASN][1000 genomes]
rs10140164	0.92[CHB][hapmap];0.92[JPT][hapmap]
rs10143038	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10149103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1107960	0.92[CHB][hapmap];0.92[JPT][hapmap]
rs1107961	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11158028	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11621165	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11621177	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11626396	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11627963	0.93[EUR][1000 genomes]
rs11629355	0.94[EUR][1000 genomes]
rs11847771	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11852045	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12587434	0.83[CEU][hapmap]
rs17128052	0.95[CEU][hapmap];0.91[CHB][hapmap];0.83[EUR][1000 genomes]
rs17128120	0.86[JPT][hapmap]
rs17253633	1.00[CEU][hapmap];0.82[CHB][hapmap];0.92[JPT][hapmap];0.93[EUR][1000 genomes]
rs2149482	0.86[ASN][1000 genomes]
rs2878172	0.92[CHB][hapmap];0.92[JPT][hapmap];0.88[YRI][hapmap]
rs2878174	0.86[JPT][hapmap]
rs34544088	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3759662	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3759663	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3759664	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3759665	0.86[ASN][1000 genomes]
rs3783641	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3783642	0.84[YRI][hapmap]
rs45459500	0.93[EUR][1000 genomes]
rs55704705	0.83[EUR][1000 genomes]
rs55726650	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55751189	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56188649	0.93[EUR][1000 genomes]
rs56213135	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57622454	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59074935	0.93[EUR][1000 genomes]
rs60258834	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61709472	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7146285	0.86[JPT][hapmap]
rs7147201	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[YRI][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7147286	0.84[YRI][hapmap]
rs72713482	0.85[EUR][1000 genomes]
rs72715547	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72715552	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72715575	0.93[EUR][1000 genomes]
rs8006363	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8006568	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs8008858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8010570	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8011358	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8012152	0.86[JPT][hapmap]
rs8017210	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8018688	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8019390	0.92[CHB][hapmap];0.92[JPT][hapmap]
rs8019824	0.85[ASN][1000 genomes]
rs8020545	0.92[CHB][hapmap];0.92[JPT][hapmap]
rs8022049	0.86[JPT][hapmap]
rs8022453	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.91[TSI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8023187	0.91[CHB][hapmap];0.92[JPT][hapmap];0.87[YRI][hapmap];0.85[ASN][1000 genomes]
rs943913	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530042	chr14:55208170-55386966	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv932970	chr14:55326559-55532749	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs8007267	FBXO34	cis	cerebellum	SCAN
rs8007267	LGALS3	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55370600-55388600	Weak transcription	HepG2	liver

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