Variant report

Variant	rs55726650
Chromosome Location	chr14:55397257-55397258
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55368563..55370483-chr14:55397139..55400016,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131979	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10143038	0.88[EUR][1000 genomes]
rs10149103	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1107961	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11158028	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11621165	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11621177	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11626396	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11627963	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11629355	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11847771	0.90[EUR][1000 genomes]
rs11852045	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17128052	0.81[EUR][1000 genomes]
rs17253633	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3759662	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3759663	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3759664	0.94[EUR][1000 genomes]
rs3783641	0.82[EUR][1000 genomes]
rs45459500	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55704705	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55751189	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56188649	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56213135	0.91[EUR][1000 genomes]
rs57622454	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59074935	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60258834	0.91[EUR][1000 genomes]
rs61224609	0.81[ASN][1000 genomes]
rs61709472	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7147201	0.82[EUR][1000 genomes]
rs72713482	0.82[EUR][1000 genomes]
rs72715547	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72715552	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72715575	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8006363	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8007267	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8008858	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8010570	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8011358	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8017210	0.85[EUR][1000 genomes]
rs8018688	0.87[EUR][1000 genomes]
rs8022453	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs878944	0.81[ASN][1000 genomes]
rs943913	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932970	chr14:55326559-55532749	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55389600-55406600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:55392800-55402400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:55394200-55443000	Weak transcription	HSMMtube	muscle
4	chr14:55394400-55409600	Weak transcription	A549	lung
5	chr14:55394400-55428800	Weak transcription	HSMM	muscle
6	chr14:55395200-55414800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr14:55395200-55422800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr14:55395400-55415000	Weak transcription	Fetal Muscle Leg	muscle

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