Variant report

Variant	rs11621165
Chromosome Location	chr14:55375426-55375427
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55369324..55371934-chr14:55373929..55376733,3	K562	blood:
2	chr14:55367938..55370447-chr14:55374823..55378227,3	K562	blood:

Variant related genes	Relation type
ENSG00000131979	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10136972	0.86[ASN][1000 genomes]
rs10137071	0.86[ASN][1000 genomes]
rs10140164	0.91[CHB][hapmap];0.92[JPT][hapmap]
rs10143038	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10149103	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1107960	0.92[CHB][hapmap];0.93[JPT][hapmap]
rs1107961	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11158028	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11621177	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11626396	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11627963	0.87[EUR][1000 genomes]
rs11629355	0.88[EUR][1000 genomes]
rs11847771	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11852045	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17128052	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[EUR][1000 genomes]
rs17128120	0.86[JPT][hapmap]
rs17253633	0.95[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap];0.87[EUR][1000 genomes]
rs2149482	0.86[ASN][1000 genomes]
rs2878172	0.91[CHB][hapmap];0.92[JPT][hapmap]
rs2878174	0.86[JPT][hapmap]
rs34544088	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3759662	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3759663	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3759664	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3759665	0.86[ASN][1000 genomes]
rs3783641	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs45459500	0.87[EUR][1000 genomes]
rs55726650	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55751189	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56188649	0.87[EUR][1000 genomes]
rs56213135	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57095876	0.82[EUR][1000 genomes]
rs57622454	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59074935	0.87[EUR][1000 genomes]
rs60258834	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61709472	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7146285	0.86[JPT][hapmap]
rs7147201	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72713482	0.90[EUR][1000 genomes]
rs72715547	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72715552	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72715575	0.87[EUR][1000 genomes]
rs8006363	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8006568	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs8007267	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8008858	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8010570	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8011358	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8012152	0.86[JPT][hapmap]
rs8017210	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8018688	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8019390	0.92[CHB][hapmap];0.93[JPT][hapmap]
rs8019824	0.85[ASN][1000 genomes]
rs8020545	0.92[CHB][hapmap];0.93[JPT][hapmap]
rs8022049	0.86[JPT][hapmap]
rs8022453	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8023187	0.91[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs943913	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530042	chr14:55208170-55386966	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv932970	chr14:55326559-55532749	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	esv3358123	chr14:55359251-55378030	Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55370200-55376800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr14:55370600-55388600	Weak transcription	HepG2	liver
3	chr14:55374400-55375600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr14:55374600-55375600	Enhancers	Dnd41	blood
5	chr14:55374800-55376000	Enhancers	Fetal Intestine Large	intestine
6	chr14:55374800-55376600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr14:55375400-55376800	Enhancers	Monocytes-CD14+_RO01746	blood

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